-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2727

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 39, 59
Sorry, prediction GeneMark_model.110551_t fails validation.
(GAA)	 AG	39-59	GT	GAG
(AGG)	 AG	85-132	GT	AGG
(GAG)	 AG	164-244	GT	GGG
(AGA)	 AG	279-303	GA	GAG
-recovered GeneMark_model.110551_t, terminal, 279, 303
-recovered GeneMark_model.110551_t, internal, 39, 59
-recovered GeneMark_model.110551_t, internal, 85, 132
-recovered GeneMark_model.110551_t, internal, 164, 244

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 29, 172
Couldn't classify 584, 774
Sorry, prediction snap_scaffold_2727-snap.1-T1 fails validation.
(GTC)	 AG	29-172	GT	AGG
(TGG)	 AG	302-427	GT	AGG
(TGG)	 AG	584-774	GT	GGG
-recovered snap_scaffold_2727-snap.1-T1, internal, 29, 172
-recovered snap_scaffold_2727-snap.1-T1, internal, 302, 427
-recovered snap_scaffold_2727-snap.1-T1, internal, 584, 774
Valid prediction for GlimmerHMM_glimmerT_63195-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63195-T1 29-267-terminal-1 is invalid.
Couldn't classify 1, 172
Couldn't classify 584, 774
Sorry, prediction Augustus_model.g42162.t1 fails validation.
(CCA)	 TC	1-172	GT	AGG
(TGG)	 AG	302-427	GT	AGG
(TGG)	 AG	584-774	GT	GGG
-recovered Augustus_model.g42162.t1, internal, 302, 427
-recovered Augustus_model.g42162.t1, internal, 584, 774
Valid prediction for GlimmerHMM_glimmerT_63194-T1
Couldn't classify 29, 172
Sorry, prediction GeneMark_model.110552_t fails validation.
(GTC)	 AG	29-172	GT	AGG
(TGG)	 AG	302-427	GT	AGG
(TGG)	 AG	584-740	GT	GAG
(ATG)	 AG	770-791	GA	GAG
-recovered GeneMark_model.110552_t, terminal, 770, 791
-recovered GeneMark_model.110552_t, internal, 29, 172
-recovered GeneMark_model.110552_t, internal, 302, 427
-recovered GeneMark_model.110552_t, internal, 584, 740
Couldn't classify 28, 172
Couldn't classify 584, 774
Sorry, prediction pasa_asmbl_37192.p1 fails validation.
(GGT)	 CA	28-172	GT	AGG
(TGG)	 AG	302-427	GT	AGG
(TGG)	 AG	584-774	GT	GGG
-recovered pasa_asmbl_37192.p1, internal, 302, 427
-recovered pasa_asmbl_37192.p1, internal, 584, 774

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1135
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support