-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2725

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)add_exon() Sorry, snap_scaffold_2725-snap.1-T1 279-826-single-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_63193-T1
Couldn't classify 652, 811
Sorry, prediction GeneMark_model.110549_t fails validation.
(ATG)	 AG	356-462	GT	GAG
(AGT)	 AG	652-811	GT	AGG
-recovered GeneMark_model.110549_t, initial, 356, 462
-recovered GeneMark_model.110549_t, internal, 356, 462
-recovered GeneMark_model.110549_t, internal, 652, 811
add_exon() Sorry, Augustus_model.g42161.t1 279-826-single-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1136
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support