-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2722

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 720, 1024
Sorry, prediction snap_scaffold_2722-snap.1-T1 fails validation.
(GCG)	 AG	720-1024	GT	ATG
-recovered snap_scaffold_2722-snap.1-T1, internal, 720, 1024
Couldn't classify 246, 266
Couldn't classify 720, 1024
Sorry, prediction GeneMark_model.110547_t fails validation.
(ACT)	 AG	246-266	GT	GAG
(AGA)	 AG	302-337	GT	AGG
(ACA)	 AG	360-365	GT	AGG
(ACA)	 AG	396-437	GT	AGG
(AGA)	 AG	462-479	GT	AGG
(GAA)	 AG	508-533	GT	ACG
(GCG)	 AG	720-1024	GT	ATG
-recovered GeneMark_model.110547_t, internal, 246, 266
-recovered GeneMark_model.110547_t, internal, 302, 337
-recovered GeneMark_model.110547_t, internal, 360, 365
-recovered GeneMark_model.110547_t, internal, 396, 437
-recovered GeneMark_model.110547_t, internal, 462, 479
-recovered GeneMark_model.110547_t, internal, 508, 533
-recovered GeneMark_model.110547_t, internal, 720, 1024

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1137
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support