-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_272

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8277, 8513
Sorry, prediction snap_scaffold_272-snap.2-T1 fails validation.
(ATG)	 GG	4606-4659	GT	GGG
(GGC)	 AG	4672-4935	GT	CAG
(ACC)	 AG	5390-5517	GT	GGG
(GAA)	 AG	7746-7880	GT	GGG
(GAA)	 AG	8277-8513	GT	CAG
-recovered snap_scaffold_272-snap.2-T1, initial, 4606, 4659
-recovered snap_scaffold_272-snap.2-T1, internal, 4672, 4935
-recovered snap_scaffold_272-snap.2-T1, internal, 5390, 5517
-recovered snap_scaffold_272-snap.2-T1, internal, 7746, 7880
-recovered snap_scaffold_272-snap.2-T1, internal, 8277, 8513
Valid prediction for GeneMark_model.107147_t
Valid prediction for GeneMark_model.107146_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6092, 6292
Couldn't classify 7978, 8175
Sorry, prediction pasa_asmbl_37186.p2 fails validation.
(GTG)	 AG	6092-6292	GT	AGG
(ATC)	 AG	7978-8175	AG	TGA
-recovered pasa_asmbl_37186.p2, internal, 6092, 6292
Couldn't classify 230, 602
Sorry, prediction snap_scaffold_272-snap.1-T1 fails validation.
(GTC)	 AG	230-602	GT	AGG
(GGG)	 AG	879-1016	GT	GGG
(GTC)	 AG	3175-3328	GT	CGG
(GGT)	 AG	3404-3511	GT	TGG
(GTC)	 AG	3612-3737	GT	AGG
(TAT)	 AG	4911-4929	GT	ATG
(GTC)	 AG	5289-5406	GT	AGG
(GTG)	 AG	6092-6268	GT	AGG
(ATC)	 AG	7978-8172	GT	TGG
(AAT)	 AG	8393-8398	AA	AGA
-recovered snap_scaffold_272-snap.1-T1, terminal, 8393, 8398
-recovered snap_scaffold_272-snap.1-T1, internal, 230, 602
-recovered snap_scaffold_272-snap.1-T1, internal, 879, 1016
-recovered snap_scaffold_272-snap.1-T1, internal, 3175, 3328
-recovered snap_scaffold_272-snap.1-T1, internal, 3404, 3511
-recovered snap_scaffold_272-snap.1-T1, internal, 3612, 3737
-recovered snap_scaffold_272-snap.1-T1, internal, 4911, 4929
-recovered snap_scaffold_272-snap.1-T1, internal, 5289, 5406
-recovered snap_scaffold_272-snap.1-T1, internal, 6092, 6268
-recovered snap_scaffold_272-snap.1-T1, internal, 7978, 8172
Couldn't classify 329, 619
Sorry, prediction GeneMark_model.107148_t fails validation.
(GGG)	 AG	329-619	GT	GGG
(ACA)	 AG	643-709	GT	AGG
(GGG)	 AG	879-1016	GT	GGG
(GTC)	 AG	3175-3528	AA	GAA
-recovered GeneMark_model.107148_t, terminal, 3175, 3528
-recovered GeneMark_model.107148_t, internal, 329, 619
-recovered GeneMark_model.107148_t, internal, 643, 709
-recovered GeneMark_model.107148_t, internal, 879, 1016
Couldn't classify 3612, 3736
Sorry, prediction pasa_asmbl_37187.p1 fails validation.
(ATG)	 GT	345-500	GT	AGG
(GGG)	 AG	879-1016	GT	GGG
(GTC)	 AG	3175-3328	GT	CGG
(GGT)	 AG	3404-3511	GT	TGG
(GTC)	 AG	3612-3736	GG	CAG
-recovered pasa_asmbl_37187.p1, initial, 345, 500
-recovered pasa_asmbl_37187.p1, internal, 879, 1016
-recovered pasa_asmbl_37187.p1, internal, 3175, 3328
-recovered pasa_asmbl_37187.p1, internal, 3404, 3511
Valid prediction for GlimmerHMM_glimmerT_61616-T1
Couldn't classify 7978, 8172
Sorry, prediction GeneMark_model.107145_t fails validation.
(ATG)	 AG	5883-5885	GT	TGG
(GTG)	 AG	6092-6268	GT	AGG
(ATC)	 AG	7978-8172	GT	TGG
-recovered GeneMark_model.107145_t, initial, 5883, 5885
-recovered GeneMark_model.107145_t, internal, 5883, 5885
-recovered GeneMark_model.107145_t, internal, 6092, 6268
-recovered GeneMark_model.107145_t, internal, 7978, 8172
Valid prediction for GlimmerHMM_glimmerT_61615-T1
Couldn't classify 230, 500
Couldn't classify 7978, 8172
Sorry, prediction Augustus_model.g40967.t1 fails validation.
(GTC)	 AG	230-500	GT	AGG
(GGG)	 AG	879-1016	GT	GGG
(GTC)	 AG	3175-3328	GT	CGG
(GGT)	 AG	3404-3511	GT	TGG
(GTC)	 AG	3612-3737	GT	AGG
(GTG)	 AG	4864-4909	GT	TAG
(GTC)	 AG	5289-5406	GT	AGG
(GTG)	 AG	6092-6292	GT	AGG
(ATC)	 AG	7978-8172	GT	TGG
-recovered Augustus_model.g40967.t1, internal, 230, 500
-recovered Augustus_model.g40967.t1, internal, 879, 1016
-recovered Augustus_model.g40967.t1, internal, 3175, 3328
-recovered Augustus_model.g40967.t1, internal, 3404, 3511
-recovered Augustus_model.g40967.t1, internal, 3612, 3737
-recovered Augustus_model.g40967.t1, internal, 4864, 4909
-recovered Augustus_model.g40967.t1, internal, 5289, 5406
-recovered Augustus_model.g40967.t1, internal, 6092, 6292
-recovered Augustus_model.g40967.t1, internal, 7978, 8172

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8499, rend_intergenic: 4606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8728
-exon list size: 53


building trellis

1.8    
3.6    
5.5    
7.3    
9.1    
10.9    
12.7    
14.5    
16.4    
18.2    
20.0    
21.8    
23.6    
25.5    
27.3    
29.1    
30.9    
32.7    
34.5    
36.4    
38.2    
40.0    
41.8    
43.6    
45.5    
47.3    
49.1    
50.9    
52.7    
54.5    
56.4    
58.2    
60.0    
61.8    
63.6    
65.5    
67.3    
69.1    
70.9    
72.7    
74.5    
76.4    
78.2    
80.0    
81.8    
83.6    
85.5    
87.3    
89.1    
90.9    
92.7    
94.5    
96.4    
98.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 8499, rend_intergenic: 4606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support