-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2717

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 360, 1127
Sorry, prediction GeneMark_model.110544_t fails validation.
(ATG)	 CG	152-174	GT	GGG
(GGT)	 AG	197-208	GT	AGG
(GGT)	 AG	231-242	GT	AGG
(GTA)	 AG	360-1127	GT	AGG
-recovered GeneMark_model.110544_t, initial, 152, 174
-recovered GeneMark_model.110544_t, internal, 197, 208
-recovered GeneMark_model.110544_t, internal, 231, 242
-recovered GeneMark_model.110544_t, internal, 360, 1127

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2717-snap.1-T1
Couldn't classify 788, 865
Sorry, prediction Augustus_model.g42158.t1 fails validation.
(ATG)	 TG	27-403	GT	GTG
(CTC)	 AG	788-865	GT	AAG
-recovered Augustus_model.g42158.t1, initial, 27, 403
-recovered Augustus_model.g42158.t1, internal, 788, 865

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1138
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support