-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2712

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 15, 92
Sorry, prediction GeneMark_model.110541_t fails validation.
(GGT)	 AG	15-92	GT	AGG
(GGT)	 AG	117-131	GT	GGG
(TGA)	 AG	894-975	GT	CTG
(ACC)	 AG	1096-1122	CC	AGC
-recovered GeneMark_model.110541_t, terminal, 1096, 1122
-recovered GeneMark_model.110541_t, internal, 15, 92
-recovered GeneMark_model.110541_t, internal, 117, 131
-recovered GeneMark_model.110541_t, internal, 894, 975

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1140
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support