-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2710

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 896, 1101
Sorry, prediction snap_scaffold_2710-snap.1-T1 fails validation.
(ATG)	 AG	684-886	GT	AGG
(GGG)	 AG	896-1101	GT	AGG
-recovered snap_scaffold_2710-snap.1-T1, initial, 684, 886
-recovered snap_scaffold_2710-snap.1-T1, internal, 684, 886
-recovered snap_scaffold_2710-snap.1-T1, internal, 896, 1101
Sorry, intron length (8) is less than minimum required (10)
Couldn't classify 35, 40
Couldn't classify 910, 1101
Sorry, prediction GeneMark_model.110540_t fails validation.
(GAG)	 AG	35-40	GT	GGG
(GAA)	 AG	80-182	GT	CTG
(GAA)	 AG	600-817	GT	AGG
(GGG)	 AG	842-886	GT	AGG
(GAG)	 AG	910-1101	GT	AGG
-recovered GeneMark_model.110540_t, internal, 35, 40
-recovered GeneMark_model.110540_t, internal, 80, 182
-recovered GeneMark_model.110540_t, internal, 600, 817
-recovered GeneMark_model.110540_t, internal, 842, 886
-recovered GeneMark_model.110540_t, internal, 910, 1101

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 930, 1051
Sorry, prediction Augustus_model.g42155.t1 fails validation.
(ATG)	 GA	678-698	GT	CAG
(AAC)	 AG	930-1051	GT	AGG
-recovered Augustus_model.g42155.t1, initial, 678, 698
-recovered Augustus_model.g42155.t1, internal, 930, 1051

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1140
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support