-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_271

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_271-snap.1-T1
Valid prediction for Augustus_model.g40966.t1
Couldn't classify 8497, 8603
Sorry, prediction GlimmerHMM_glimmerT_61614-T1 fails validation.
(ATG)	 CA	3616-3991	GT	AGG
(ATC)	 AG	4044-4254	GT	GGG
(GTT)	 AG	5087-5219	GT	TGG
(GAA)	 AG	5488-6552	GT	ATG
(GAA)	 AG	8327-8414	GT	CGG
(CGC)	 AG	8497-8603	GT	AGG
-recovered GlimmerHMM_glimmerT_61614-T1, initial, 3616, 3991
-recovered GlimmerHMM_glimmerT_61614-T1, internal, 4044, 4254
-recovered GlimmerHMM_glimmerT_61614-T1, internal, 5087, 5219
-recovered GlimmerHMM_glimmerT_61614-T1, internal, 5488, 6552
-recovered GlimmerHMM_glimmerT_61614-T1, internal, 8327, 8414
-recovered GlimmerHMM_glimmerT_61614-T1, internal, 8497, 8603
Valid prediction for snap_scaffold_271-snap.2-T1
Couldn't classify 8497, 8603
Sorry, prediction GeneMark_model.107144_t fails validation.
(ATG)	 CA	3378-3431	GT	AGG
(TGG)	 AG	3784-3991	GT	AGG
(GCA)	 AG	4544-4625	GT	TGG
(CCT)	 AG	5535-6552	GT	ATG
(GAA)	 AG	8327-8414	GT	CGG
(TGA)	 AG	8447-8458	GT	AGG
(CGC)	 AG	8497-8603	GT	AGG
-recovered GeneMark_model.107144_t, initial, 3378, 3431
-recovered GeneMark_model.107144_t, internal, 3784, 3991
-recovered GeneMark_model.107144_t, internal, 4544, 4625
-recovered GeneMark_model.107144_t, internal, 5535, 6552
-recovered GeneMark_model.107144_t, internal, 8327, 8414
-recovered GeneMark_model.107144_t, internal, 8447, 8458
-recovered GeneMark_model.107144_t, internal, 8497, 8603
Couldn't classify 2, 54
Sorry, prediction pasa_asmbl_37180.p1 fails validation.
(CAG)	 T	2-54	GT	AGG
(GGA)	 AG	491-1016	TG	AAT
-recovered pasa_asmbl_37180.p1, terminal, 491, 1016
Couldn't classify 1, 54
Sorry, prediction HiQ_model.g40965.t1 fails validation.
(CCA)	 CT	1-54	GT	AGG
(GGA)	 AG	491-1016	TG	AAT
-recovered HiQ_model.g40965.t1, terminal, 491, 1016
Valid prediction for GeneMark_model.107143_t
Valid prediction for GlimmerHMM_glimmerT_61613-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61613-T1 491-1016-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8730
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support