-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2709

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 34, 63
Sorry, prediction GeneMark_model.110539_t fails validation.
(AGA)	 AG	34-63	GT	AGG
(AGG)	 AG	101-109	GT	GAG
(AAT)	 AG	203-353	GT	GCG
(AGC)	 AG	556-620	GC	GGG
(AGA)	 AG	642-723	CT	AAC
-recovered GeneMark_model.110539_t, terminal, 642, 723
-recovered GeneMark_model.110539_t, internal, 34, 63
-recovered GeneMark_model.110539_t, internal, 101, 109
-recovered GeneMark_model.110539_t, internal, 203, 353
-recovered GeneMark_model.110539_t, internal, 556, 620

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1140
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support