-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2708

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2708-snap.1-T1
Couldn't classify 881, 973
Couldn't classify 1101, 1126
Sorry, prediction GeneMark_model.110538_t fails validation.
(AGA)	 AG	881-973	GT	GGG
(AGA)	 AG	996-1004	GT	GGG
(AGA)	 AG	1027-1038	GT	GGG
(AGA)	 AG	1063-1074	GT	GGG
(AGA)	 AG	1101-1126	GT	GGG
-recovered GeneMark_model.110538_t, internal, 881, 973
-recovered GeneMark_model.110538_t, internal, 996, 1004
-recovered GeneMark_model.110538_t, internal, 1027, 1038
-recovered GeneMark_model.110538_t, internal, 1063, 1074
-recovered GeneMark_model.110538_t, internal, 1101, 1126

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1141
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support