-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2707

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 424, 525
Couldn't classify 895, 976
Sorry, prediction snap_scaffold_2707-snap.1-T1 fails validation.
(GGA)	 AG	424-525	GT	AGG
(GTA)	 AG	643-670	GT	GTG
(GGG)	 AG	895-976	GT	CGG
-recovered snap_scaffold_2707-snap.1-T1, internal, 424, 525
-recovered snap_scaffold_2707-snap.1-T1, internal, 643, 670
-recovered snap_scaffold_2707-snap.1-T1, internal, 895, 976
Couldn't classify 895, 976
Sorry, prediction GlimmerHMM_glimmerT_63189-T1 fails validation.
(ATG)	 TC	770-790	GT	AGG
(GGG)	 AG	895-976	GT	CGG
-recovered GlimmerHMM_glimmerT_63189-T1, initial, 770, 790
-recovered GlimmerHMM_glimmerT_63189-T1, internal, 895, 976
Couldn't classify 16, 30
Sorry, prediction GeneMark_model.110537_t fails validation.
(CAA)	 AG	16-30	GT	AGG
(GGA)	 AG	424-525	GT	AGG
(ACA)	 AG	556-607	CC	GAC
-recovered GeneMark_model.110537_t, terminal, 556, 607
-recovered GeneMark_model.110537_t, internal, 16, 30
-recovered GeneMark_model.110537_t, internal, 424, 525
Couldn't classify 1, 30
Sorry, prediction Augustus_model.g42154.t1 fails validation.
(CCT)	 GC	1-30	GT	AGG
(GGA)	 AG	424-525	GT	AGG
(GTA)	 AG	643-790	GT	AGG
(GGG)	 AG	895-999	AA	AGA
-recovered Augustus_model.g42154.t1, terminal, 895, 999
-recovered Augustus_model.g42154.t1, internal, 424, 525
-recovered Augustus_model.g42154.t1, internal, 643, 790

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1141
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support