-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2705

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2705-snap.1-T1
Couldn't classify 42, 110
Sorry, prediction GeneMark_model.110535_t fails validation.
(AGG)	 AG	42-110	GC	GGG
(AGG)	 AG	133-297	GT	GGG
(GAT)	 AG	321-338	GT	GGG
(GGC)	 AG	361-453	GT	GGG
(GAA)	 AG	482-508	GT	AAG
(ATC)	 AG	533-547	GT	AGG
(AGA)	 AG	581-637	GT	GAG
(AAA)	 AG	663-713	GT	GAG
(AGA)	 AG	739-868	TC	AAT
-recovered GeneMark_model.110535_t, terminal, 739, 868
-recovered GeneMark_model.110535_t, internal, 42, 110
-recovered GeneMark_model.110535_t, internal, 133, 297
-recovered GeneMark_model.110535_t, internal, 321, 338
-recovered GeneMark_model.110535_t, internal, 361, 453
-recovered GeneMark_model.110535_t, internal, 482, 508
-recovered GeneMark_model.110535_t, internal, 533, 547
-recovered GeneMark_model.110535_t, internal, 581, 637
-recovered GeneMark_model.110535_t, internal, 663, 713

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1142
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support