-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2704

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 34, 42
Couldn't classify 1057, 1127
Sorry, prediction GeneMark_model.110534_t fails validation.
(GGA)	 AG	34-42	GC	GGG
(GAA)	 AG	68-76	GT	GAG
(GGA)	 AG	216-318	GT	GGG
(CAG)	 AG	615-630	GT	ACG
(ATG)	 AG	674-683	GT	GGG
(AGG)	 AG	902-970	GT	GGG
(AGA)	 AG	1007-1036	GT	GAG
(GAG)	 AG	1057-1127	GT	AGG
-recovered GeneMark_model.110534_t, initial, 674, 683
-recovered GeneMark_model.110534_t, internal, 34, 42
-recovered GeneMark_model.110534_t, internal, 68, 76
-recovered GeneMark_model.110534_t, internal, 216, 318
-recovered GeneMark_model.110534_t, internal, 615, 630
-recovered GeneMark_model.110534_t, internal, 674, 683
-recovered GeneMark_model.110534_t, internal, 902, 970
-recovered GeneMark_model.110534_t, internal, 1007, 1036
-recovered GeneMark_model.110534_t, internal, 1057, 1127

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1142
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support