-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2700

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 706, 777
Sorry, prediction GeneMark_model.110533_t fails validation.
(ATG)	 AG	527-678	GC	GAG
(GAA)	 AG	706-777	GT	CGG
-recovered GeneMark_model.110533_t, initial, 527, 678
-recovered GeneMark_model.110533_t, internal, 527, 678
-recovered GeneMark_model.110533_t, internal, 706, 777

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 565, 671
Couldn't classify 858, 1023
Sorry, prediction Augustus_model.g42153.t1 fails validation.
(TCC)	 AG	565-671	GT	GCG
(TTC)	 AG	858-1023	GT	CGG
-recovered Augustus_model.g42153.t1, internal, 565, 671
-recovered Augustus_model.g42153.t1, internal, 858, 1023
Couldn't classify 565, 671
Couldn't classify 858, 1023
Sorry, prediction snap_scaffold_2700-snap.1-T1 fails validation.
(TCC)	 AG	565-671	GT	GCG
(TTC)	 AG	858-1023	GT	CGG
-recovered snap_scaffold_2700-snap.1-T1, internal, 565, 671
-recovered snap_scaffold_2700-snap.1-T1, internal, 858, 1023
Couldn't classify 1072, 1120
Sorry, prediction GeneMark_model.110531_t fails validation.
(ATG)	 CC	887-1023	GT	CGG
(GTG)	 AG	1072-1120	GT	AGG
-recovered GeneMark_model.110531_t, initial, 887, 1023
-recovered GeneMark_model.110531_t, internal, 1072, 1120

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1144
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support