-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_270

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8173, 8270
Sorry, prediction snap_scaffold_270-snap.2-T1 fails validation.
(ATG)	 AG	1377-1496	GT	GGG
(GCC)	 AG	1614-1765	GT	AGG
(AAG)	 AG	2091-2281	GT	AGG
(TGA)	 AG	2841-3011	GT	AGG
(TGG)	 AG	8173-8270	GT	AGG
-recovered snap_scaffold_270-snap.2-T1, initial, 1377, 1496
-recovered snap_scaffold_270-snap.2-T1, internal, 1377, 1496
-recovered snap_scaffold_270-snap.2-T1, internal, 1614, 1765
-recovered snap_scaffold_270-snap.2-T1, internal, 2091, 2281
-recovered snap_scaffold_270-snap.2-T1, internal, 2841, 3011
-recovered snap_scaffold_270-snap.2-T1, internal, 8173, 8270
Couldn't classify 603, 726
Sorry, prediction GeneMark_model.107140_t fails validation.
(AGC)	 AG	603-726	GT	CTG
(GAA)	 AG	1169-1177	GT	GCG
(GGA)	 AG	1244-1298	CG	AGC
-recovered GeneMark_model.107140_t, terminal, 1244, 1298
-recovered GeneMark_model.107140_t, internal, 603, 726
-recovered GeneMark_model.107140_t, internal, 1169, 1177
Valid prediction for GeneMark_model.107141_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 532, 608
Sorry, prediction GlimmerHMM_glimmerT_61612-T1 fails validation.
(ACG)	 AG	532-608	GT	ACG
(GGT)	 AG	1043-1079	GT	AGG
(GTC)	 AG	1998-2095	GT	GGG
(AAG)	 AG	5744-5902	GC	GAG
-recovered GlimmerHMM_glimmerT_61612-T1, terminal, 5744, 5902
-recovered GlimmerHMM_glimmerT_61612-T1, internal, 532, 608
-recovered GlimmerHMM_glimmerT_61612-T1, internal, 1043, 1079
-recovered GlimmerHMM_glimmerT_61612-T1, internal, 1998, 2095
-recovered GlimmerHMM_glimmerT_61612-T1, internal, 5744, 5902
Couldn't classify 532, 608
Couldn't classify 8024, 8147
Sorry, prediction snap_scaffold_270-snap.1-T1 fails validation.
(ACG)	 AG	532-608	GT	ACG
(GGT)	 AG	1043-1079	GT	AGG
(GTC)	 AG	1998-2095	GT	GGG
(AAG)	 AG	5744-5898	GT	AGG
(CGC)	 AG	8024-8147	GT	TGG
-recovered snap_scaffold_270-snap.1-T1, internal, 532, 608
-recovered snap_scaffold_270-snap.1-T1, internal, 1043, 1079
-recovered snap_scaffold_270-snap.1-T1, internal, 1998, 2095
-recovered snap_scaffold_270-snap.1-T1, internal, 5744, 5898
-recovered snap_scaffold_270-snap.1-T1, internal, 8024, 8147
Couldn't classify 532, 608
Sorry, prediction GeneMark_model.107142_t fails validation.
(ACG)	 AG	532-608	GT	ACG
(GTC)	 AG	1998-2014	GT	CCG
(AAT)	 AG	2124-2177	GT	GAG
(AGA)	 AG	2212-2228	GT	ACG
(GCC)	 AG	3833-3857	GT	GAG
(GGA)	 AG	3883-4014	GT	GAG
(GGA)	 AG	4052-4120	GT	GAG
(GGA)	 AG	4146-4206	GT	TTG
(AAG)	 AG	5744-5898	GT	AGG
(GAG)	 AG	6655-6730	GT	GAG
-recovered GeneMark_model.107142_t, terminal, 6655, 6730
-recovered GeneMark_model.107142_t, internal, 532, 608
-recovered GeneMark_model.107142_t, internal, 1998, 2014
-recovered GeneMark_model.107142_t, internal, 2124, 2177
-recovered GeneMark_model.107142_t, internal, 2212, 2228
-recovered GeneMark_model.107142_t, internal, 3833, 3857
-recovered GeneMark_model.107142_t, internal, 3883, 4014
-recovered GeneMark_model.107142_t, internal, 4052, 4120
-recovered GeneMark_model.107142_t, internal, 4146, 4206
-recovered GeneMark_model.107142_t, internal, 5744, 5898
-recovered GeneMark_model.107142_t, internal, 6655, 6730
Couldn't classify 532, 608
Sorry, prediction Augustus_model.g40964.t1 fails validation.
(ACG)	 AG	532-608	GT	ACG
(GGT)	 AG	1043-1079	GT	AGG
(GTC)	 AG	1998-2095	GT	GGG
(AAG)	 AG	5744-5898	GT	AGG
(CTC)	 AG	7540-7656	GT	GTG
(CGC)	 AG	8024-8159	GT	AGG
(TGC)	 AG	8676-8714	TG	AAT
-recovered Augustus_model.g40964.t1, terminal, 8676, 8714
-recovered Augustus_model.g40964.t1, internal, 532, 608
-recovered Augustus_model.g40964.t1, internal, 1043, 1079
-recovered Augustus_model.g40964.t1, internal, 1998, 2095
-recovered Augustus_model.g40964.t1, internal, 5744, 5898
-recovered Augustus_model.g40964.t1, internal, 7540, 7656
-recovered Augustus_model.g40964.t1, internal, 8024, 8159

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8201, rend_intergenic: 1377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8732
-exon list size: 56


building trellis

1.7    
3.4    
5.2    
6.9    
8.6    
10.3    
12.1    
13.8    
15.5    
17.2    
19.0    
20.7    
22.4    
24.1    
25.9    
27.6    
29.3    
31.0    
32.8    
34.5    
36.2    
37.9    
39.7    
41.4    
43.1    
44.8    
46.6    
48.3    
50.0    
51.7    
53.4    
55.2    
56.9    
58.6    
60.3    
62.1    
63.8    
65.5    
67.2    
69.0    
70.7    
72.4    
74.1    
75.9    
77.6    
79.3    
81.0    
82.8    
84.5    
86.2    
87.9    
89.7    
91.4    
93.1    
94.8    
96.6    
98.3    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 8201, rend_intergenic: 1377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support