-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_27/scaffold_27_9686041-10036408 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_27-snap.2288-T1 Valid prediction for snap_scaffold_27-snap.2302-T1 Valid prediction for snap_scaffold_27-snap.2314-T1 Valid prediction for GeneMark_model.103518_t Valid prediction for snap_scaffold_27-snap.2283-T1 Valid prediction for snap_scaffold_27-snap.2319-T1 Valid prediction for snap_scaffold_27-snap.2280-T1 Valid prediction for snap_scaffold_27-snap.2296-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.103537_t Valid prediction for pasa_asmbl_36508.p1 Valid prediction for CodingQuarry_transcript_41891-T1 Valid prediction for GlimmerHMM_glimmerT_59305-T1 Couldn't classify 165363, 165452 Sorry, prediction pasa_asmbl_36481.p1 fails validation. (ATG) AT 159357-159426 GT TGG (GTA) AG 160683-160858 GT CGG (ATA) AG 161156-161369 GT AGG (AGT) AG 161486-161615 GT GGG (CTG) AG 164449-164560 GT CTG (GGC) AG 165363-165452 AA TCA -recovered pasa_asmbl_36481.p1, initial, 159357, 159426 -recovered pasa_asmbl_36481.p1, internal, 160683, 160858 -recovered pasa_asmbl_36481.p1, internal, 161156, 161369 -recovered pasa_asmbl_36481.p1, internal, 161486, 161615 -recovered pasa_asmbl_36481.p1, internal, 164449, 164560 Valid prediction for Augustus_model.g39447.t1 Valid prediction for HiQ_model.g39441.t1 Valid prediction for GlimmerHMM_glimmerT_59279-T1 Valid prediction for GeneMark_model.103492_t Valid prediction for Augustus_model.g39450.t1 Valid prediction for GeneMark_model.103564_t Valid prediction for GeneMark_model.103547_t Valid prediction for snap_scaffold_27-snap.2308-T1 Valid prediction for GeneMark_model.103500_t Couldn't classify 182688, 182714 Couldn't classify 183475, 183624 Sorry, prediction pasa_asmbl_36487.p1 fails validation. (TCA) CC 182688-182714 GT AGG (CCT) AG 183039-183389 GT AGG (GTG) AG 183475-183624 AT CCA -recovered pasa_asmbl_36487.p1, internal, 183039, 183389 Valid prediction for pasa_asmbl_36506.p1 Valid prediction for CodingQuarry_transcript_41889-T1 Valid prediction for snap_scaffold_27-snap.2303-T1 Valid prediction for CodingQuarry_transcript_41890-T1 Valid prediction for CodingQuarry_transcript_41887-T1 Valid prediction for Augustus_model.g39442.t1 Valid prediction for snap_scaffold_27-snap.2313-T1 Couldn't classify 305709, 306005 Couldn't classify 317066, 317197 Sorry, prediction pasa_asmbl_36513.p1 fails validation. (CTA) CT 305709-306005 GT TGG (GAG) AG 306338-306553 GT AGG (GCA) AG 308677-308811 GT AGG (ATG) AG 308899-309030 GT AGG (GGT) AG 309307-309432 GT AGG (GAA) AG 309512-309622 GT GAG (GAG) AG 309713-309802 GT AGG (CAC) AG 312037-312171 GT AGG (GGC) AG 314953-315046 GT GAG (CTG) AG 315374-315572 GT AGG (TGC) AG 315921-316011 GT GGG (GAG) AG 317066-317197 AA AGA -recovered pasa_asmbl_36513.p1, initial, 308899, 309030 -recovered pasa_asmbl_36513.p1, internal, 306338, 306553 -recovered pasa_asmbl_36513.p1, internal, 308677, 308811 -recovered pasa_asmbl_36513.p1, internal, 308899, 309030 -recovered pasa_asmbl_36513.p1, internal, 309307, 309432 -recovered pasa_asmbl_36513.p1, internal, 309512, 309622 -recovered pasa_asmbl_36513.p1, internal, 309713, 309802 -recovered pasa_asmbl_36513.p1, internal, 312037, 312171 -recovered pasa_asmbl_36513.p1, internal, 314953, 315046 -recovered pasa_asmbl_36513.p1, internal, 315374, 315572 -recovered pasa_asmbl_36513.p1, internal, 315921, 316011 Valid prediction for snap_scaffold_27-snap.2282-T1 Valid prediction for CodingQuarry_transcript_41894-T1 Couldn't classify 253549, 253565 Sorry, prediction pasa_asmbl_36499.p1 fails validation. (GCC) GT 253549-253565 GT CGG (GAG) AG 253946-253994 GT ATG (GAA) AG 254482-254518 GT AGG (ACA) AG 254630-254672 GT AGG (GAT) AG 255493-255565 GC AGG (GAC) AG 255678-255735 GT AGG (CAT) AG 255898-255935 CA AGC -recovered pasa_asmbl_36499.p1, terminal, 255898, 255935 -recovered pasa_asmbl_36499.p1, internal, 253946, 253994 -recovered pasa_asmbl_36499.p1, internal, 254482, 254518 -recovered pasa_asmbl_36499.p1, internal, 254630, 254672 -recovered pasa_asmbl_36499.p1, internal, 255493, 255565 -recovered pasa_asmbl_36499.p1, internal, 255678, 255735 Valid prediction for GlimmerHMM_glimmerT_59295-T1 Valid prediction for GlimmerHMM_glimmerT_59313-T1 Valid prediction for snap_scaffold_27-snap.2269-T1 Valid prediction for snap_scaffold_27-snap.2271-T1 Valid prediction for GlimmerHMM_glimmerT_59276-T1 Valid prediction for GeneMark_model.103508_t Valid prediction for GeneMark_model.103520_t Valid prediction for GlimmerHMM_glimmerT_59301-T1 Couldn't classify 263228, 263296 Sorry, prediction pasa_asmbl_36502.p1 fails validation. (ATG) CC 260054-260099 GT AGG (GCG) AG 260815-260943 GT AGG (AGT) AG 261217-261328 GT AGG (AGA) AG 262433-262583 GT TGG (ACT) AG 262711-262842 GT AGG (GAT) AG 263058-263123 GT CTG (ACC) AG 263228-263296 GT AGG -recovered pasa_asmbl_36502.p1, initial, 260054, 260099 -recovered pasa_asmbl_36502.p1, internal, 260815, 260943 -recovered pasa_asmbl_36502.p1, internal, 261217, 261328 -recovered pasa_asmbl_36502.p1, internal, 262433, 262583 -recovered pasa_asmbl_36502.p1, internal, 262711, 262842 -recovered pasa_asmbl_36502.p1, internal, 263058, 263123 -recovered pasa_asmbl_36502.p1, internal, 263228, 263296 Valid prediction for GeneMark_model.103557_t Valid prediction for snap_scaffold_27-snap.2292-T1 Valid prediction for GeneMark_model.103522_t Valid prediction for GlimmerHMM_glimmerT_59291-T1 Valid prediction for GlimmerHMM_glimmerT_59309-T1 Valid prediction for GeneMark_model.103534_t Valid prediction for HiQ_model.g39457.t1 Couldn't classify 178358, 178488 Sorry, prediction pasa_asmbl_36486.p1 fails validation. (ATG) CC 176206-176290 GT AGG (GTT) AG 176596-176769 GT TGG (GTA) AG 176959-177095 GT GGG (GGT) AG 177252-177425 GT AGG (GTG) AG 177638-177794 GT GGG (AGT) AG 178358-178488 GG CAG -recovered pasa_asmbl_36486.p1, initial, 176206, 176290 -recovered pasa_asmbl_36486.p1, internal, 176596, 176769 -recovered pasa_asmbl_36486.p1, internal, 176959, 177095 -recovered pasa_asmbl_36486.p1, internal, 177252, 177425 -recovered pasa_asmbl_36486.p1, internal, 177638, 177794 Valid prediction for HiQ_model.g39456.t1 Valid prediction for Augustus_model.g39452.t1 Valid prediction for GeneMark_model.103542_t Valid prediction for pasa_asmbl_36495.p1 Valid prediction for GeneMark_model.103539_t Valid prediction for snap_scaffold_27-snap.2290-T1 Valid prediction for GeneMark_model.103541_t Valid prediction for GlimmerHMM_glimmerT_59266-T1 Valid prediction for GeneMark_model.103545_t Valid prediction for snap_scaffold_27-snap.2326-T1 Valid prediction for CodingQuarry_transcript_41892-T1 Valid prediction for snap_scaffold_27-snap.2309-T1 Valid prediction for GeneMark_model.103535_t Couldn't classify 317198, 317212 Sorry, prediction pasa_asmbl_36515.p1 fails validation. (AAA) AG 317198-317212 GT AGG (GAT) AG 317547-317730 GT AGG (ATA) AG 317917-318002 GT AGG (AGC) AG 318336-318476 AA GAA -recovered pasa_asmbl_36515.p1, terminal, 318336, 318476 -recovered pasa_asmbl_36515.p1, internal, 317198, 317212 -recovered pasa_asmbl_36515.p1, internal, 317547, 317730 -recovered pasa_asmbl_36515.p1, internal, 317917, 318002 Valid prediction for GeneMark_model.103526_t Valid prediction for snap_scaffold_27-snap.2316-T1 Valid prediction for snap_scaffold_27-snap.2323-T1 Valid prediction for GlimmerHMM_glimmerT_59303-T1 Valid prediction for snap_scaffold_27-snap.2285-T1 Valid prediction for snap_scaffold_27-snap.2300-T1 Valid prediction for snap_scaffold_27-snap.2263-T1 Valid prediction for snap_scaffold_27-snap.2331-T1 Valid prediction for snap_scaffold_27-snap.2276-T1 Valid prediction for snap_scaffold_27-snap.2289-T1 Valid prediction for snap_scaffold_27-snap.2312-T1 Valid prediction for GeneMark_model.103503_t Valid prediction for GeneMark_model.103530_t Valid prediction for Augustus_model.g39455.t1 Valid prediction for snap_scaffold_27-snap.2272-T1 Valid prediction for GeneMark_model.103523_t Valid prediction for GeneMark_model.103551_t Valid prediction for GeneMark_model.103560_t Valid prediction for snap_scaffold_27-snap.2328-T1 Valid prediction for GlimmerHMM_glimmerT_59311-T1 Couldn't classify 173774, 173927 Couldn't classify 174881, 175072 Sorry, prediction pasa_asmbl_36484.p1 fails validation. (GTG) CA 173774-173927 GT GAG (GCG) AG 174519-174778 GT AGG (GTA) AG 174881-175072 AC CGA -recovered pasa_asmbl_36484.p1, internal, 174519, 174778 Valid prediction for snap_scaffold_27-snap.2294-T1 Valid prediction for GlimmerHMM_glimmerT_59275-T1 Valid prediction for GlimmerHMM_glimmerT_59281-T1 Valid prediction for pasa_asmbl_36498.p1 Valid prediction for GlimmerHMM_glimmerT_59296-T1 Valid prediction for GlimmerHMM_glimmerT_59293-T1 Valid prediction for CodingQuarry_transcript_41893-T1 Valid prediction for GlimmerHMM_glimmerT_59263-T1 Valid prediction for Augustus_model.g39448.t1 Valid prediction for HiQ_model.g39446.t1 Valid prediction for CodingQuarry_transcript_41886-T1 Valid prediction for snap_scaffold_27-snap.2264-T1 Valid prediction for snap_scaffold_27-snap.2325-T1 Valid prediction for GeneMark_model.103516_t Valid prediction for GeneMark_model.103495_t Valid prediction for GlimmerHMM_glimmerT_59304-T1 Valid prediction for GeneMark_model.103566_t Valid prediction for snap_scaffold_27-snap.2311-T1 Valid prediction for GeneMark_model.103514_t Valid prediction for GeneMark_model.103552_t Valid prediction for Augustus_model.g39454.t1 Valid prediction for GeneMark_model.103532_t Valid prediction for GlimmerHMM_glimmerT_59273-T1 Valid prediction for GeneMark_model.103505_t Valid prediction for GlimmerHMM_glimmerT_59299-T1 Valid prediction for GlimmerHMM_glimmerT_59314-T1 Valid prediction for GlimmerHMM_glimmerT_59269-T1 Valid prediction for GeneMark_model.103524_t Valid prediction for GlimmerHMM_glimmerT_59284-T1 Valid prediction for GlimmerHMM_glimmerT_59307-T1 Valid prediction for GeneMark_model.103510_t Valid prediction for GeneMark_model.103490_t Valid prediction for GeneMark_model.103507_t Valid prediction for snap_scaffold_27-snap.2277-T1 Valid prediction for snap_scaffold_27-snap.2305-T1 Valid prediction for CodingQuarry_transcript_41895-T1 Valid prediction for snap_scaffold_27-snap.2268-T1 Valid prediction for snap_scaffold_27-snap.2327-T1 Valid prediction for snap_scaffold_27-snap.2330-T1 Valid prediction for GeneMark_model.103563_t Valid prediction for GeneMark_model.103567_t Valid prediction for GeneMark_model.103561_t Valid prediction for snap_scaffold_27-snap.2321-T1 Valid prediction for snap_scaffold_27-snap.2266-T1 Valid prediction for GeneMark_model.103498_t Valid prediction for pasa_asmbl_36480.p1 Valid prediction for GeneMark_model.103555_t Valid prediction for GeneMark_model.103550_t Valid prediction for CodingQuarry_transcript_41888-T1 Valid prediction for Augustus_model.g39459.t1 Valid prediction for GlimmerHMM_glimmerT_59264-T1 Valid prediction for GeneMark_model.103497_t Valid prediction for GeneMark_model.103512_t Valid prediction for Augustus_model.g39439.t1 Valid prediction for GeneMark_model.103554_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_27-snap.2307-T1 Valid prediction for GlimmerHMM_glimmerT_59285-T1 Valid prediction for GeneMark_model.103565_t Valid prediction for snap_scaffold_27-snap.2281-T1 Valid prediction for GeneMark_model.103559_t Valid prediction for GeneMark_model.103529_t Valid prediction for GeneMark_model.103533_t Couldn't classify 151002, 152804 Sorry, prediction pasa_asmbl_37107.p1 fails validation. (CTG) GC 151002-152804 TG GAT Valid prediction for GeneMark_model.103531_t Valid prediction for GlimmerHMM_glimmerT_59312-T1 Couldn't classify 230225, 230371 Couldn't classify 233763, 233826 Sorry, prediction pasa_asmbl_37103.p1 fails validation. (GGC) TA 230225-230371 GT TGG (ATC) AG 231812-232010 GT GGG (TGC) AG 232271-232426 GT GAG (ACG) AG 232869-232991 GT CTG (CCA) AG 233271-233400 GT AAG (AGA) AG 233763-233826 TC TCT -recovered pasa_asmbl_37103.p1, internal, 231812, 232010 -recovered pasa_asmbl_37103.p1, internal, 232271, 232426 -recovered pasa_asmbl_37103.p1, internal, 232869, 232991 -recovered pasa_asmbl_37103.p1, internal, 233271, 233400 Valid prediction for snap_scaffold_27-snap.2301-T1 Valid prediction for GlimmerHMM_glimmerT_59265-T1 Valid prediction for snap_scaffold_27-snap.2329-T1 Valid prediction for GlimmerHMM_glimmerT_59268-T1 Valid prediction for GlimmerHMM_glimmerT_59298-T1 Valid prediction for GeneMark_model.103558_t Valid prediction for Augustus_model.g39453.t1 Valid prediction for GlimmerHMM_glimmerT_59300-T1 Valid prediction for snap_scaffold_27-snap.2320-T1 Valid prediction for GeneMark_model.103502_t Valid prediction for Augustus_model.g39438.t1 Valid prediction for GeneMark_model.103556_t Valid prediction for Augustus_model.g39449.t1 Valid prediction for GlimmerHMM_glimmerT_59270-T1 Valid prediction for snap_scaffold_27-snap.2298-T1 Valid prediction for GeneMark_model.103509_t Valid prediction for snap_scaffold_27-snap.2332-T1 Valid prediction for GlimmerHMM_glimmerT_59272-T1 Valid prediction for GeneMark_model.103496_t Valid prediction for snap_scaffold_27-snap.2275-T1 Valid prediction for GlimmerHMM_glimmerT_59290-T1 Valid prediction for snap_scaffold_27-snap.2265-T1 Valid prediction for snap_scaffold_27-snap.2318-T1 Valid prediction for GeneMark_model.103562_t Valid prediction for snap_scaffold_27-snap.2293-T1 Valid prediction for snap_scaffold_27-snap.2287-T1 Valid prediction for GeneMark_model.103506_t Valid prediction for snap_scaffold_27-snap.2261-T1 Valid prediction for GeneMark_model.103568_t Valid prediction for GeneMark_model.103543_t Valid prediction for snap_scaffold_27-snap.2297-T1 Valid prediction for GeneMark_model.103491_t Valid prediction for GeneMark_model.103521_t Valid prediction for GlimmerHMM_glimmerT_59294-T1 Valid prediction for GeneMark_model.103536_t Valid prediction for GeneMark_model.103499_t Valid prediction for GlimmerHMM_glimmerT_59288-T1 Valid prediction for snap_scaffold_27-snap.2295-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for snap_scaffold_27-snap.2317-T1 Valid prediction for snap_scaffold_27-snap.2270-T1 Valid prediction for snap_scaffold_27-snap.2304-T1 Valid prediction for Augustus_model.g39437.t1 Valid prediction for Augustus_model.g39458.t1 Valid prediction for GlimmerHMM_glimmerT_59308-T1 Valid prediction for Augustus_model.g39451.t1 Valid prediction for GlimmerHMM_glimmerT_59297-T1 Valid prediction for GlimmerHMM_glimmerT_59278-T1 Valid prediction for Augustus_model.g39460.t1 Valid prediction for GlimmerHMM_glimmerT_59289-T1 Valid prediction for GlimmerHMM_glimmerT_59310-T1 Valid prediction for GlimmerHMM_glimmerT_59286-T1 Valid prediction for snap_scaffold_27-snap.2267-T1 Valid prediction for HiQ_model.g39443.t1 Valid prediction for GeneMark_model.103525_t Valid prediction for GlimmerHMM_glimmerT_59292-T1 Valid prediction for GeneMark_model.103515_t Valid prediction for GlimmerHMM_glimmerT_59280-T1 Valid prediction for GeneMark_model.103511_t Valid prediction for GlimmerHMM_glimmerT_59282-T1 Valid prediction for snap_scaffold_27-snap.2279-T1 Valid prediction for GeneMark_model.103540_t Valid prediction for Augustus_model.g39440.t1 Valid prediction for GlimmerHMM_glimmerT_59277-T1 Valid prediction for snap_scaffold_27-snap.2262-T1 Valid prediction for GlimmerHMM_glimmerT_59274-T1 Valid prediction for snap_scaffold_27-snap.2284-T1 Valid prediction for GeneMark_model.103504_t Valid prediction for GlimmerHMM_glimmerT_59283-T1 Valid prediction for GeneMark_model.103493_t Valid prediction for Augustus_model.g39444.t1 Valid prediction for GlimmerHMM_glimmerT_59271-T1 Valid prediction for GlimmerHMM_glimmerT_59306-T1 Couldn't classify 192283, 192465 Couldn't classify 193276, 193521 Sorry, prediction pasa_asmbl_37106.p1 fails validation. (AAC) CA 192283-192465 GT AGG (ACA) AG 193276-193521 AT ACA Valid prediction for GlimmerHMM_glimmerT_59287-T1 Valid prediction for GeneMark_model.103546_t Valid prediction for GlimmerHMM_glimmerT_59315-T1 Valid prediction for snap_scaffold_27-snap.2286-T1 Valid prediction for snap_scaffold_27-snap.2315-T1 Valid prediction for snap_scaffold_27-snap.2274-T1 Valid prediction for GlimmerHMM_glimmerT_59267-T1 Valid prediction for GeneMark_model.103513_t Valid prediction for GeneMark_model.103538_t Valid prediction for GeneMark_model.103549_t Valid prediction for GeneMark_model.103517_t Valid prediction for Augustus_model.g39445.t1 Valid prediction for snap_scaffold_27-snap.2273-T1 Valid prediction for GeneMark_model.103519_t Valid prediction for GlimmerHMM_glimmerT_59302-T1 Valid prediction for snap_scaffold_27-snap.2322-T1 Valid prediction for snap_scaffold_27-snap.2291-T1 Valid prediction for snap_scaffold_27-snap.2306-T1 Valid prediction for snap_scaffold_27-snap.2299-T1 Valid prediction for GeneMark_model.103544_t Valid prediction for GeneMark_model.103527_t Valid prediction for GeneMark_model.103548_t Valid prediction for GeneMark_model.103494_t Valid prediction for snap_scaffold_27-snap.2310-T1 Valid prediction for snap_scaffold_27-snap.2278-T1 Valid prediction for snap_scaffold_27-snap.2324-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 161947, rend_intergenic: 161944 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46362, rend_intergenic: 38141 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77350, rend_intergenic: 63401 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102435, rend_intergenic: 98552 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 111894, rend_intergenic: 108742 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 118788, rend_intergenic: 116102 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144571, rend_intergenic: 119636 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 150862, rend_intergenic: 145106 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157034, rend_intergenic: 155092 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165617, rend_intergenic: 163013 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183666, rend_intergenic: 181183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213011, rend_intergenic: 207197 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 232251, rend_intergenic: 221004 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 249121, rend_intergenic: 248841 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 263344, rend_intergenic: 261203 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 289608, rend_intergenic: 288798 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 298467, rend_intergenic: 289836 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 306187, rend_intergenic: 304000 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 311154, rend_intergenic: 308863 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 313406, rend_intergenic: 311955 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 318436, rend_intergenic: 314929 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 326925, rend_intergenic: 324905 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 350368 -exon list size: 1156 building trellis 0.1 0.2 0.3 0.3 0.4 0.5 0.6 0.7 0.8 0.9 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.3 7.4 7.5 7.6 7.7 7.8 7.9 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.3 19.4 19.5 19.6 19.7 19.8 19.9 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.3 26.4 26.5 26.6 26.7 26.8 26.9 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.3 38.4 38.5 38.6 38.7 38.8 38.9 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.3 45.4 45.5 45.6 45.7 45.8 45.9 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.3 50.4 50.5 50.6 50.7 50.8 50.9 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.3 57.4 57.5 57.6 57.7 57.8 57.9 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.3 69.4 69.5 69.6 69.7 69.8 69.9 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.3 76.4 76.5 76.6 76.7 76.8 76.9 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.3 88.4 88.5 88.6 88.7 88.8 88.9 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.3 95.4 95.5 95.6 95.7 95.8 95.9 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.7 99.8 99.9 -found 59 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 161947, rend_intergenic: 161944 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 46362, rend_intergenic: 38141 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77350, rend_intergenic: 63401 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102435, rend_intergenic: 98552 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 111894, rend_intergenic: 108742 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 118788, rend_intergenic: 116102 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144571, rend_intergenic: 119636 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 150862, rend_intergenic: 145106 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157034, rend_intergenic: 155092 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165617, rend_intergenic: 163013 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183666, rend_intergenic: 181183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213011, rend_intergenic: 207197 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 232251, rend_intergenic: 221004 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 249121, rend_intergenic: 248841 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 263344, rend_intergenic: 261203 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 289608, rend_intergenic: 288798 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 298467, rend_intergenic: 289836 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 306187, rend_intergenic: 304000 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 311154, rend_intergenic: 308863 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 313406, rend_intergenic: 311955 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 318436, rend_intergenic: 314929 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 326925, rend_intergenic: 324905 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 44 predictions persist after filtering for low support