-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_27/scaffold_27_9130870-9320959

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_27-snap.2157-T1
Valid prediction for Augustus_model.g39411.t1
Valid prediction for GlimmerHMM_glimmerT_59210-T1
Valid prediction for snap_scaffold_27-snap.2142-T1
Valid prediction for GeneMark_model.103367_t
Valid prediction for snap_scaffold_27-snap.2149-T1
Valid prediction for GlimmerHMM_glimmerT_59207-T1
Valid prediction for snap_scaffold_27-snap.2150-T1
Valid prediction for Augustus_model.g39395.t1
Valid prediction for GeneMark_model.103355_t
Valid prediction for GeneMark_model.103337_t
Couldn't classify 41529, 41659
Sorry, prediction pasa_asmbl_36472.p1 fails validation.
(TCT)	 AG	41529-41659	GT	AGG
(CTC)	 AG	42046-42229	GA	AGG
-recovered pasa_asmbl_36472.p1, terminal, 42046, 42229
-recovered pasa_asmbl_36472.p1, internal, 41529, 41659
Valid prediction for CodingQuarry_transcript_41876-T1
Valid prediction for GlimmerHMM_glimmerT_59213-T1
Valid prediction for GeneMark_model.103347_t
Valid prediction for GlimmerHMM_glimmerT_59193-T1
Valid prediction for GlimmerHMM_glimmerT_59211-T1
Valid prediction for snap_scaffold_27-snap.2169-T1
Valid prediction for GeneMark_model.103353_t
Valid prediction for GeneMark_model.103318_t
Valid prediction for snap_scaffold_27-snap.2137-T1
Valid prediction for GeneMark_model.103321_t
Valid prediction for Augustus_model.g39407.t1
Valid prediction for snap_scaffold_27-snap.2138-T1
Valid prediction for GlimmerHMM_glimmerT_59190-T1
Valid prediction for GlimmerHMM_glimmerT_59204-T1
Valid prediction for GeneMark_model.103323_t
Valid prediction for snap_scaffold_27-snap.2155-T1
Valid prediction for snap_scaffold_27-snap.2153-T1
Valid prediction for GeneMark_model.103324_t
Valid prediction for GeneMark_model.103326_t
Valid prediction for GeneMark_model.103335_t
Valid prediction for HiQ_model.g39399.t1
Valid prediction for snap_scaffold_27-snap.2145-T1
Valid prediction for GlimmerHMM_glimmerT_59185-T1
Valid prediction for Augustus_model.g39408.t1
Valid prediction for snap_scaffold_27-snap.2143-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_27-snap.2163-T1
Valid prediction for HiQ_model.g39394.t1
Valid prediction for snap_scaffold_27-snap.2140-T1
Valid prediction for GlimmerHMM_glimmerT_59205-T1
Couldn't classify 25399, 25476
Couldn't classify 27173, 27337
Sorry, prediction pasa_asmbl_36471.p1 fails validation.
(AGC)	 GC	25399-25476	GT	CGG
(GAG)	 AG	26183-26302	GT	AGG
(GTG)	 AG	27173-27337	GT	GGG
-recovered pasa_asmbl_36471.p1, internal, 26183, 26302
-recovered pasa_asmbl_36471.p1, internal, 27173, 27337
Valid prediction for GlimmerHMM_glimmerT_59197-T1
Valid prediction for GeneMark_model.103358_t
Valid prediction for GeneMark_model.103342_t
Valid prediction for GeneMark_model.103319_t
Couldn't classify 11571, 11656
Sorry, prediction pasa_asmbl_36466.p1 fails validation.
(ATG)	 AT	5321-5533	GT	AGG
(ATT)	 AG	5797-5857	GT	AGG
(GAT)	 AG	5985-6115	GT	CTG
(GTG)	 AG	7340-7498	GT	AGG
(GAT)	 AG	7830-7950	GT	AGG
(TCC)	 AG	8778-8967	GT	AGG
(CAC)	 AG	10865-10991	GT	AGG
(GTC)	 AG	11211-11373	GT	GGG
(ACT)	 AG	11571-11656	TG	GGT
-recovered pasa_asmbl_36466.p1, initial, 5321, 5533
add_exon() Sorry, pasa_asmbl_36466.p1 7830-7950-terminal-3 is invalid.
-recovered pasa_asmbl_36466.p1, terminal, 7830, 7950
-recovered pasa_asmbl_36466.p1, internal, 5797, 5857
-recovered pasa_asmbl_36466.p1, internal, 5985, 6115
-recovered pasa_asmbl_36466.p1, internal, 7340, 7498
-recovered pasa_asmbl_36466.p1, internal, 7830, 7950
-recovered pasa_asmbl_36466.p1, internal, 8778, 8967
-recovered pasa_asmbl_36466.p1, internal, 10865, 10991
-recovered pasa_asmbl_36466.p1, internal, 11211, 11373
Valid prediction for GeneMark_model.103363_t
Valid prediction for Augustus_model.g39398.t1
Valid prediction for GlimmerHMM_glimmerT_59187-T1
Valid prediction for GeneMark_model.103344_t
Valid prediction for Augustus_model.g39393.t1
Valid prediction for GlimmerHMM_glimmerT_59188-T1
Valid prediction for GlimmerHMM_glimmerT_59191-T1
Valid prediction for GlimmerHMM_glimmerT_59203-T1
Valid prediction for snap_scaffold_27-snap.2167-T1
Valid prediction for snap_scaffold_27-snap.2147-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_59208-T1
Valid prediction for GeneMark_model.103351_t
Valid prediction for GeneMark_model.103330_t
Valid prediction for snap_scaffold_27-snap.2136-T1
Valid prediction for GeneMark_model.103369_t
Valid prediction for snap_scaffold_27-snap.2158-T1
Valid prediction for Augustus_model.g39396.t1
Valid prediction for Augustus_model.g39402.t1
Valid prediction for snap_scaffold_27-snap.2141-T1
Valid prediction for GeneMark_model.103333_t
Valid prediction for GeneMark_model.103366_t
Valid prediction for GlimmerHMM_glimmerT_59194-T1
Valid prediction for GeneMark_model.103361_t
Valid prediction for snap_scaffold_27-snap.2176-T1
Valid prediction for snap_scaffold_27-snap.2174-T1
Valid prediction for Augustus_model.g39405.t1
Valid prediction for GlimmerHMM_glimmerT_59201-T1
Couldn't classify 3397, 3531
Sorry, prediction pasa_asmbl_36465.p1 fails validation.
(CAG)	 TG	3397-3531	GT	AGG
(GAC)	 AG	3950-4152	GT	AGG
(GTG)	 AG	4541-4661	AT	AGA
-recovered pasa_asmbl_36465.p1, terminal, 4541, 4661
-recovered pasa_asmbl_36465.p1, internal, 3950, 4152
Valid prediction for snap_scaffold_27-snap.2151-T1
Valid prediction for Augustus_model.g39401.t1
Couldn't classify 18033, 18119
Couldn't classify 20216, 20561
Sorry, prediction pasa_asmbl_36469.p1 fails validation.
(GTG)	 GG	18033-18119	GT	GGG
(TGT)	 AG	19807-19895	GT	GTG
(GTC)	 AG	20216-20561	GT	AGG
-recovered pasa_asmbl_36469.p1, internal, 19807, 19895
-recovered pasa_asmbl_36469.p1, internal, 20216, 20561
Valid prediction for GeneMark_model.103357_t
Valid prediction for snap_scaffold_27-snap.2172-T1
Valid prediction for GeneMark_model.103339_t
Valid prediction for Augustus_model.g39410.t1
Valid prediction for GeneMark_model.103352_t
Valid prediction for snap_scaffold_27-snap.2165-T1
Valid prediction for GlimmerHMM_glimmerT_59198-T1
Valid prediction for Augustus_model.g39397.t1
Valid prediction for snap_scaffold_27-snap.2160-T1
Valid prediction for snap_scaffold_27-snap.2168-T1
Couldn't classify 152049, 153692
Sorry, prediction pasa_asmbl_36475.p1 fails validation.
(GAG)	 TA	152049-153692	AG	GAA
Valid prediction for snap_scaffold_27-snap.2154-T1
Valid prediction for snap_scaffold_27-snap.2177-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.103345_t
Valid prediction for GeneMark_model.103325_t
Valid prediction for Augustus_model.g39409.t1
Valid prediction for GeneMark_model.103343_t
Valid prediction for GeneMark_model.103354_t
Valid prediction for GeneMark_model.103328_t
Valid prediction for GeneMark_model.103346_t
Valid prediction for Augustus_model.g39412.t1
Valid prediction for CodingQuarry_transcript_41878-T1
Valid prediction for GlimmerHMM_glimmerT_59202-T1
Valid prediction for GlimmerHMM_glimmerT_59189-T1
Valid prediction for GlimmerHMM_glimmerT_59199-T1
Valid prediction for snap_scaffold_27-snap.2166-T1
Valid prediction for snap_scaffold_27-snap.2148-T1
Valid prediction for GeneMark_model.103332_t
Valid prediction for GeneMark_model.103362_t
Valid prediction for GlimmerHMM_glimmerT_59212-T1
Valid prediction for GeneMark_model.103338_t
Valid prediction for snap_scaffold_27-snap.2152-T1
Valid prediction for snap_scaffold_27-snap.2139-T1
Valid prediction for GlimmerHMM_glimmerT_59195-T1
Valid prediction for GlimmerHMM_glimmerT_59209-T1
Valid prediction for HiQ_model.g39406.t1
Valid prediction for snap_scaffold_27-snap.2170-T1
Valid prediction for GeneMark_model.103368_t
Valid prediction for Augustus_model.g39400.t1
Valid prediction for GlimmerHMM_glimmerT_59192-T1
Valid prediction for snap_scaffold_27-snap.2159-T1
Valid prediction for GeneMark_model.103340_t
Couldn't classify 109555, 109587
Sorry, prediction GeneMark_model.103341_t fails validation.
(GGA)	 AG	109555-109587	GT	GGG
(AGA)	 AG	111023-111061	GC	GAG
(AGG)	 AG	111087-111131	GT	AGG
(GGA)	 AG	111156-111230	GT	AGG
(GAA)	 AG	111259-111313	GC	GAG
-recovered GeneMark_model.103341_t, terminal, 111156, 111230
-recovered GeneMark_model.103341_t, terminal, 111259, 111313
-recovered GeneMark_model.103341_t, internal, 109555, 109587
-recovered GeneMark_model.103341_t, internal, 111023, 111061
-recovered GeneMark_model.103341_t, internal, 111087, 111131
-recovered GeneMark_model.103341_t, internal, 111156, 111230
-recovered GeneMark_model.103341_t, internal, 111259, 111313
Valid prediction for GlimmerHMM_glimmerT_59200-T1
Valid prediction for GeneMark_model.103350_t
Valid prediction for GlimmerHMM_glimmerT_59206-T1
Valid prediction for GeneMark_model.103334_t
Valid prediction for GeneMark_model.103349_t
Couldn't classify 98630, 98698
Sorry, prediction pasa_asmbl_37080.p1 fails validation.
(ATG)	 CC	95545-95619	GT	TGG
(GCC)	 AG	95839-96012	GT	AGG
(GTG)	 AG	96508-96665	GT	AGG
(GAA)	 AG	97285-97419	GT	AGG
(TGC)	 AG	97729-97816	GT	AGG
(CTG)	 AG	98025-98156	GT	CTG
(GTG)	 AG	98630-98698	GT	AGG
-recovered pasa_asmbl_37080.p1, initial, 95545, 95619
-recovered pasa_asmbl_37080.p1, terminal, 97285, 97419
-recovered pasa_asmbl_37080.p1, internal, 95839, 96012
-recovered pasa_asmbl_37080.p1, internal, 96508, 96665
-recovered pasa_asmbl_37080.p1, internal, 97285, 97419
-recovered pasa_asmbl_37080.p1, internal, 97729, 97816
-recovered pasa_asmbl_37080.p1, internal, 98025, 98156
-recovered pasa_asmbl_37080.p1, internal, 98630, 98698
Valid prediction for HiQ_model.g39404.t1
Valid prediction for snap_scaffold_27-snap.2164-T1
Valid prediction for GeneMark_model.103320_t
Valid prediction for GlimmerHMM_glimmerT_59186-T1
Valid prediction for snap_scaffold_27-snap.2156-T1
Valid prediction for GeneMark_model.103327_t
Valid prediction for GeneMark_model.103356_t
Valid prediction for snap_scaffold_27-snap.2146-T1
Valid prediction for snap_scaffold_27-snap.2171-T1
Valid prediction for GeneMark_model.103322_t
Valid prediction for GlimmerHMM_glimmerT_59196-T1
Valid prediction for GeneMark_model.103336_t
Valid prediction for snap_scaffold_27-snap.2161-T1
Valid prediction for snap_scaffold_27-snap.2144-T1
Valid prediction for snap_scaffold_27-snap.2162-T1
Valid prediction for GeneMark_model.103348_t
Couldn't classify 90533, 90628
Sorry, prediction pasa_asmbl_37081.p1 fails validation.
(ATG)	 GA	82377-82571	GT	AGG
(CCT)	 AG	83034-83129	GT	AGG
(GTT)	 AG	83428-83511	GT	AGG
(AAA)	 AG	83700-83774	GT	AGG
(GAA)	 AG	83986-84093	GT	AGG
(ACA)	 AG	84678-84868	GT	AAG
(GCT)	 AG	85342-85509	GT	CAG
(TTA)	 AG	85994-86111	GT	AGG
(CTC)	 AG	86384-86673	GT	CTG
(GAA)	 AG	87028-87138	GT	AGG
(GTT)	 AG	87232-87357	GT	AGG
(CAT)	 AG	87896-88102	GT	AGG
(CAT)	 AG	88319-88427	GT	AGG
(GCT)	 AG	89567-89660	GT	AGG
(TGG)	 AG	89761-89918	GT	ACG
(GTT)	 AG	90533-90628	GT	AGG
-recovered pasa_asmbl_37081.p1, initial, 82377, 82571
-recovered pasa_asmbl_37081.p1, terminal, 87232, 87357
-recovered pasa_asmbl_37081.p1, internal, 83034, 83129
-recovered pasa_asmbl_37081.p1, internal, 83428, 83511
-recovered pasa_asmbl_37081.p1, internal, 83700, 83774
-recovered pasa_asmbl_37081.p1, internal, 83986, 84093
-recovered pasa_asmbl_37081.p1, internal, 84678, 84868
-recovered pasa_asmbl_37081.p1, internal, 85342, 85509
-recovered pasa_asmbl_37081.p1, internal, 85994, 86111
-recovered pasa_asmbl_37081.p1, internal, 86384, 86673
-recovered pasa_asmbl_37081.p1, internal, 87028, 87138
-recovered pasa_asmbl_37081.p1, internal, 87232, 87357
-recovered pasa_asmbl_37081.p1, internal, 87896, 88102
-recovered pasa_asmbl_37081.p1, internal, 88319, 88427
-recovered pasa_asmbl_37081.p1, internal, 89567, 89660
-recovered pasa_asmbl_37081.p1, internal, 89761, 89918
-recovered pasa_asmbl_37081.p1, internal, 90533, 90628
Valid prediction for GeneMark_model.103331_t
Valid prediction for pasa_asmbl_37082.p1
Valid prediction for GeneMark_model.103360_t
Valid prediction for Augustus_model.g39403.t1
Valid prediction for GeneMark_model.103364_t
Valid prediction for snap_scaffold_27-snap.2175-T1
Valid prediction for GeneMark_model.103329_t
Valid prediction for snap_scaffold_27-snap.2173-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11438, rend_intergenic: 10905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17489, rend_intergenic: 11561  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35677, rend_intergenic: 25978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42229, rend_intergenic: 36507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49825, rend_intergenic: 44563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93653, rend_intergenic: 61884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107690, rend_intergenic: 94133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114374, rend_intergenic: 112282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117009, rend_intergenic: 114863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124804, rend_intergenic: 120610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133585, rend_intergenic: 130625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141208, rend_intergenic: 138427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145935, rend_intergenic: 142611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147502, rend_intergenic: 146114  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164080, rend_intergenic: 159751  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169257, rend_intergenic: 164616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173578, rend_intergenic: 170731  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176726, rend_intergenic: 174180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188391, rend_intergenic: 180069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 190090
-exon list size: 794


building trellis

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40.5    
40.6    
40.7    
40.8    
41.0    
41.1    
41.2    
41.3    
41.5    
41.6    
41.7    
41.8    
42.0    
42.1    
42.2    
42.3    
42.5    
42.6    
42.7    
42.8    
43.0    
43.1    
43.2    
43.3    
43.5    
43.6    
43.7    
43.8    
44.0    
44.1    
44.2    
44.3    
44.5    
44.6    
44.7    
44.8    
45.0    
45.1    
45.2    
45.4    
45.5    
45.6    
45.7    
45.9    
46.0    
46.1    
46.2    
46.4    
46.5    
46.6    
46.7    
46.9    
47.0    
47.1    
47.2    
47.4    
47.5    
47.6    
47.7    
47.9    
48.0    
48.1    
48.2    
48.4    
48.5    
48.6    
48.7    
48.9    
49.0    
49.1    
49.2    
49.4    
49.5    
49.6    
49.7    
49.9    
50.0    
50.1    
50.3    
50.4    
50.5    
50.6    
50.8    
50.9    
51.0    
51.1    
51.3    
51.4    
51.5    
51.6    
51.8    
51.9    
52.0    
52.1    
52.3    
52.4    
52.5    
52.6    
52.8    
52.9    
53.0    
53.1    
53.3    
53.4    
53.5    
53.6    
53.8    
53.9    
54.0    
54.1    
54.3    
54.4    
54.5    
54.6    
54.8    
54.9    
55.0    
55.2    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.5    
56.7    
56.8    
56.9    
57.0    
57.2    
57.3    
57.4    
57.5    
57.7    
57.8    
57.9    
58.0    
58.2    
58.3    
58.4    
58.5    
58.7    
58.8    
58.9    
59.0    
59.2    
59.3    
59.4    
59.5    
59.7    
59.8    
59.9    
60.1    
60.2    
60.3    
60.4    
60.6    
60.7    
60.8    
60.9    
61.1    
61.2    
61.3    
61.4    
61.6    
61.7    
61.8    
61.9    
62.1    
62.2    
62.3    
62.4    
62.6    
62.7    
62.8    
62.9    
63.1    
63.2    
63.3    
63.4    
63.6    
63.7    
63.8    
63.9    
64.1    
64.2    
64.3    
64.4    
64.6    
64.7    
64.8    
64.9    
65.1    
65.2    
65.3    
65.5    
65.6    
65.7    
65.8    
66.0    
66.1    
66.2    
66.3    
66.5    
66.6    
66.7    
66.8    
67.0    
67.1    
67.2    
67.3    
67.5    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.3    
68.5    
68.6    
68.7    
68.8    
69.0    
69.1    
69.2    
69.3    
69.5    
69.6    
69.7    
69.8    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.7    
70.9    
71.0    
71.1    
71.2    
71.4    
71.5    
71.6    
71.7    
71.9    
72.0    
72.1    
72.2    
72.4    
72.5    
72.6    
72.7    
72.9    
73.0    
73.1    
73.2    
73.4    
73.5    
73.6    
73.7    
73.9    
74.0    
74.1    
74.2    
74.4    
74.5    
74.6    
74.7    
74.9    
75.0    
75.1    
75.3    
75.4    
75.5    
75.6    
75.8    
75.9    
76.0    
76.1    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.1    
77.3    
77.4    
77.5    
77.6    
77.8    
77.9    
78.0    
78.1    
78.3    
78.4    
78.5    
78.6    
78.8    
78.9    
79.0    
79.1    
79.3    
79.4    
79.5    
79.6    
79.8    
79.9    
80.0    
80.2    
80.3    
80.4    
80.5    
80.7    
80.8    
80.9    
81.0    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.0    
82.2    
82.3    
82.4    
82.5    
82.7    
82.8    
82.9    
83.0    
83.2    
83.3    
83.4    
83.5    
83.7    
83.8    
83.9    
84.0    
84.2    
84.3    
84.4    
84.5    
84.7    
84.8    
84.9    
85.1    
85.2    
85.3    
85.4    
85.6    
85.7    
85.8    
85.9    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
86.9    
87.1    
87.2    
87.3    
87.4    
87.6    
87.7    
87.8    
87.9    
88.1    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.1    
89.2    
89.3    
89.4    
89.6    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.8    
91.0    
91.1    
91.2    
91.3    
91.5    
91.6    
91.7    
91.8    
92.0    
92.1    
92.2    
92.3    
92.5    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.3    
93.5    
93.6    
93.7    
93.8    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.7    
95.9    
96.0    
96.1    
96.2    
96.4    
96.5    
96.6    
96.7    
96.9    
97.0    
97.1    
97.2    
97.4    
97.5    
97.6    
97.7    
97.9    
98.0    
98.1    
98.2    
98.4    
98.5    
98.6    
98.7    
98.9    
99.0    
99.1    
99.2    
99.4    
99.5    
99.6    
99.7    
99.9    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 11438, rend_intergenic: 10905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17489, rend_intergenic: 11561  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35677, rend_intergenic: 25978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42229, rend_intergenic: 36507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49825, rend_intergenic: 44563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93653, rend_intergenic: 61884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107690, rend_intergenic: 94133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114374, rend_intergenic: 112282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117009, rend_intergenic: 114863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124804, rend_intergenic: 120610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133585, rend_intergenic: 130625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141208, rend_intergenic: 138427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145935, rend_intergenic: 142611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147502, rend_intergenic: 146114  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164080, rend_intergenic: 159751  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169257, rend_intergenic: 164616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173578, rend_intergenic: 170731  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176726, rend_intergenic: 174180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188391, rend_intergenic: 180069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support