-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_27/scaffold_27_8716469-8843432

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_27-snap.2042-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_59144-T1
Valid prediction for GeneMark_model.103207_t
Valid prediction for GlimmerHMM_glimmerT_59132-T1
Valid prediction for GlimmerHMM_glimmerT_59131-T1
Valid prediction for Augustus_model.g39365.t1
Valid prediction for GeneMark_model.103192_t
Valid prediction for snap_scaffold_27-snap.2073-T1
Valid prediction for GeneMark_model.103209_t
Valid prediction for snap_scaffold_27-snap.2074-T1
Valid prediction for snap_scaffold_27-snap.2066-T1
Valid prediction for GeneMark_model.103213_t
Valid prediction for snap_scaffold_27-snap.2058-T1
Valid prediction for GeneMark_model.103198_t
Valid prediction for GeneMark_model.103216_t
Valid prediction for GeneMark_model.103189_t
Valid prediction for snap_scaffold_27-snap.2062-T1
Valid prediction for GeneMark_model.103203_t
Valid prediction for snap_scaffold_27-snap.2045-T1
Valid prediction for GlimmerHMM_glimmerT_59127-T1
Valid prediction for GeneMark_model.103191_t
Valid prediction for GeneMark_model.103220_t
Valid prediction for GlimmerHMM_glimmerT_59129-T1
Valid prediction for GeneMark_model.103194_t
Valid prediction for GeneMark_model.103196_t
Valid prediction for snap_scaffold_27-snap.2071-T1
Valid prediction for GlimmerHMM_glimmerT_59137-T1
Valid prediction for snap_scaffold_27-snap.2052-T1
Valid prediction for GlimmerHMM_glimmerT_59139-T1
Valid prediction for GeneMark_model.103211_t
Valid prediction for GeneMark_model.103214_t
Valid prediction for Augustus_model.g39367.t1
Valid prediction for GeneMark_model.103205_t
Valid prediction for GeneMark_model.103224_t
Valid prediction for snap_scaffold_27-snap.2056-T1
Valid prediction for snap_scaffold_27-snap.2046-T1
Valid prediction for snap_scaffold_27-snap.2064-T1
Valid prediction for snap_scaffold_27-snap.2043-T1
Valid prediction for GeneMark_model.103222_t
Valid prediction for snap_scaffold_27-snap.2072-T1
Valid prediction for GeneMark_model.103186_t
Valid prediction for snap_scaffold_27-snap.2048-T1
Valid prediction for snap_scaffold_27-snap.2060-T1
Valid prediction for GeneMark_model.103201_t
Valid prediction for GeneMark_model.103187_t
Valid prediction for snap_scaffold_27-snap.2053-T1
Valid prediction for snap_scaffold_27-snap.2050-T1
Valid prediction for snap_scaffold_27-snap.2075-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_27-snap.2044-T1
Valid prediction for GeneMark_model.103200_t
Valid prediction for GeneMark_model.103190_t
Valid prediction for GeneMark_model.103204_t
Valid prediction for snap_scaffold_27-snap.2069-T1
Valid prediction for GeneMark_model.103197_t
Valid prediction for GlimmerHMM_glimmerT_59143-T1
Valid prediction for snap_scaffold_27-snap.2039-T1
Valid prediction for GlimmerHMM_glimmerT_59141-T1
Valid prediction for Augustus_model.g39368.t1
Valid prediction for snap_scaffold_27-snap.2068-T1
Valid prediction for GlimmerHMM_glimmerT_59128-T1
Valid prediction for GlimmerHMM_glimmerT_59142-T1
Valid prediction for snap_scaffold_27-snap.2057-T1
Valid prediction for snap_scaffold_27-snap.2070-T1
Valid prediction for GeneMark_model.103221_t
Valid prediction for GlimmerHMM_glimmerT_59145-T1
Valid prediction for GeneMark_model.103212_t
Valid prediction for GlimmerHMM_glimmerT_59135-T1
Valid prediction for GlimmerHMM_glimmerT_59125-T1
Valid prediction for GeneMark_model.103223_t
Valid prediction for GlimmerHMM_glimmerT_59130-T1
Valid prediction for GlimmerHMM_glimmerT_59134-T1
Valid prediction for GeneMark_model.103218_t
Valid prediction for snap_scaffold_27-snap.2047-T1
Valid prediction for GeneMark_model.103188_t
Valid prediction for GeneMark_model.103199_t
Valid prediction for GlimmerHMM_glimmerT_59138-T1
Valid prediction for snap_scaffold_27-snap.2040-T1
Valid prediction for snap_scaffold_27-snap.2051-T1
Valid prediction for GeneMark_model.103193_t
Valid prediction for snap_scaffold_27-snap.2041-T1
Valid prediction for GeneMark_model.103195_t
Valid prediction for GlimmerHMM_glimmerT_59140-T1
Valid prediction for snap_scaffold_27-snap.2063-T1
Valid prediction for snap_scaffold_27-snap.2055-T1
Valid prediction for GeneMark_model.103225_t
Valid prediction for snap_scaffold_27-snap.2061-T1
Valid prediction for snap_scaffold_27-snap.2049-T1
Valid prediction for GeneMark_model.103219_t
Valid prediction for GeneMark_model.103208_t
Valid prediction for GeneMark_model.103202_t
Valid prediction for GeneMark_model.103215_t
Valid prediction for GeneMark_model.103217_t
Valid prediction for GlimmerHMM_glimmerT_59136-T1
Valid prediction for GeneMark_model.103210_t
Valid prediction for GlimmerHMM_glimmerT_59126-T1
Valid prediction for Augustus_model.g39366.t1
Valid prediction for Augustus_model.g39369.t1
Valid prediction for snap_scaffold_27-snap.2054-T1
Valid prediction for GlimmerHMM_glimmerT_59133-T1
Valid prediction for snap_scaffold_27-snap.2059-T1
Valid prediction for snap_scaffold_27-snap.2067-T1
Valid prediction for snap_scaffold_27-snap.2076-T1
Valid prediction for GeneMark_model.103206_t
Valid prediction for snap_scaffold_27-snap.2065-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18444, rend_intergenic: 12819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23146, rend_intergenic: 19933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34028, rend_intergenic: 31962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40003, rend_intergenic: 37126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61942, rend_intergenic: 59493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62534, rend_intergenic: 62328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76813, rend_intergenic: 75597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78242, rend_intergenic: 77097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86777, rend_intergenic: 83162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89448, rend_intergenic: 87228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95017, rend_intergenic: 93866  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107954, rend_intergenic: 95981  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125050, rend_intergenic: 121236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 126964
-exon list size: 499


building trellis

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99.0    
99.2    
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99.6    
99.8    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 18444, rend_intergenic: 12819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23146, rend_intergenic: 19933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34028, rend_intergenic: 31962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40003, rend_intergenic: 37126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61942, rend_intergenic: 59493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62534, rend_intergenic: 62328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76813, rend_intergenic: 75597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78242, rend_intergenic: 77097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86777, rend_intergenic: 83162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89448, rend_intergenic: 87228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95017, rend_intergenic: 93866  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107954, rend_intergenic: 95981  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125050, rend_intergenic: 121236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support