-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_27/scaffold_27_8538665-8718966

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39363.t1
Valid prediction for GlimmerHMM_glimmerT_59108-T1
Valid prediction for GeneMark_model.103174_t
Valid prediction for GeneMark_model.103156_t
Valid prediction for snap_scaffold_27-snap.2034-T1
Valid prediction for snap_scaffold_27-snap.2027-T1
Valid prediction for snap_scaffold_27-snap.2023-T1
Valid prediction for GlimmerHMM_glimmerT_59119-T1
Valid prediction for GeneMark_model.103182_t
Valid prediction for GeneMark_model.103171_t
Valid prediction for snap_scaffold_27-snap.2014-T1
Valid prediction for snap_scaffold_27-snap.2032-T1
Valid prediction for GeneMark_model.103166_t
Valid prediction for GeneMark_model.103180_t
Valid prediction for snap_scaffold_27-snap.2018-T1
Valid prediction for GlimmerHMM_glimmerT_59110-T1
Valid prediction for GlimmerHMM_glimmerT_59107-T1
Valid prediction for snap_scaffold_27-snap.2024-T1
Valid prediction for snap_scaffold_27-snap.2028-T1
Valid prediction for snap_scaffold_27-snap.2029-T1
Valid prediction for GeneMark_model.103164_t
Valid prediction for GeneMark_model.103168_t
Valid prediction for GlimmerHMM_glimmerT_59123-T1
Valid prediction for GeneMark_model.103160_t
Valid prediction for snap_scaffold_27-snap.2012-T1
Valid prediction for snap_scaffold_27-snap.2013-T1
Valid prediction for GeneMark_model.103177_t
Valid prediction for GeneMark_model.103170_t
Valid prediction for GeneMark_model.103150_t
Valid prediction for GeneMark_model.103158_t
Valid prediction for GeneMark_model.103154_t
Valid prediction for GeneMark_model.103183_t
Valid prediction for snap_scaffold_27-snap.2031-T1
Valid prediction for GlimmerHMM_glimmerT_59116-T1
Valid prediction for snap_scaffold_27-snap.2009-T1
Valid prediction for GeneMark_model.103151_t
Valid prediction for snap_scaffold_27-snap.2020-T1
Valid prediction for snap_scaffold_27-snap.2035-T1
Valid prediction for Augustus_model.g39361.t1
Valid prediction for GeneMark_model.103167_t
Valid prediction for GeneMark_model.103169_t
Valid prediction for GlimmerHMM_glimmerT_59115-T1
Valid prediction for GeneMark_model.103162_t
Valid prediction for GeneMark_model.103152_t
Valid prediction for GeneMark_model.103179_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.103184_t
Valid prediction for snap_scaffold_27-snap.2021-T1
Valid prediction for snap_scaffold_27-snap.2011-T1
Valid prediction for GeneMark_model.103173_t
Valid prediction for GeneMark_model.103149_t
Valid prediction for GlimmerHMM_glimmerT_59112-T1
Valid prediction for GlimmerHMM_glimmerT_59114-T1
Valid prediction for GeneMark_model.103175_t
Valid prediction for snap_scaffold_27-snap.2016-T1
Valid prediction for snap_scaffold_27-snap.2033-T1
Valid prediction for snap_scaffold_27-snap.2025-T1
Valid prediction for snap_scaffold_27-snap.2026-T1
Valid prediction for snap_scaffold_27-snap.2022-T1
Valid prediction for snap_scaffold_27-snap.2015-T1
Valid prediction for snap_scaffold_27-snap.2019-T1
Valid prediction for GlimmerHMM_glimmerT_59109-T1
Valid prediction for Augustus_model.g39364.t1
Valid prediction for GlimmerHMM_glimmerT_59122-T1
Valid prediction for GeneMark_model.103161_t
Valid prediction for GeneMark_model.103163_t
Valid prediction for GlimmerHMM_glimmerT_59120-T1
Valid prediction for GlimmerHMM_glimmerT_59118-T1
Valid prediction for GeneMark_model.103157_t
Valid prediction for snap_scaffold_27-snap.2030-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g39362.t1
Valid prediction for GlimmerHMM_glimmerT_59113-T1
Valid prediction for GeneMark_model.103176_t
Valid prediction for GeneMark_model.103165_t
Valid prediction for GlimmerHMM_glimmerT_59124-T1
Valid prediction for GeneMark_model.103153_t
Valid prediction for snap_scaffold_27-snap.2036-T1
Valid prediction for GeneMark_model.103178_t
Valid prediction for GeneMark_model.103181_t
Valid prediction for GeneMark_model.103172_t
Valid prediction for snap_scaffold_27-snap.2010-T1
Valid prediction for GeneMark_model.103185_t
Valid prediction for snap_scaffold_27-snap.2038-T1
Valid prediction for GeneMark_model.103159_t
Valid prediction for GlimmerHMM_glimmerT_59111-T1
Valid prediction for snap_scaffold_27-snap.2017-T1
Valid prediction for GlimmerHMM_glimmerT_59117-T1
Valid prediction for snap_scaffold_27-snap.2037-T1
Valid prediction for GlimmerHMM_glimmerT_59121-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12694, rend_intergenic: 7188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21427, rend_intergenic: 13037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22525, rend_intergenic: 22221  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35297, rend_intergenic: 34228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 180302
-exon list size: 377


building trellis

0.3    
0.5    
0.8    
1.1    
1.3    
1.6    
1.8    
2.1    
2.4    
2.6    
2.9    
3.2    
3.4    
3.7    
4.0    
4.2    
4.5    
4.7    
5.0    
5.3    
5.5    
5.8    
6.1    
6.3    
6.6    
6.9    
7.1    
7.4    
7.7    
7.9    
8.2    
8.4    
8.7    
9.0    
9.2    
9.5    
9.8    
10.0    
10.3    
10.6    
10.8    
11.1    
11.3    
11.6    
11.9    
12.1    
12.4    
12.7    
12.9    
13.2    
13.5    
13.7    
14.0    
14.2    
14.5    
14.8    
15.0    
15.3    
15.6    
15.8    
16.1    
16.4    
16.6    
16.9    
17.2    
17.4    
17.7    
17.9    
18.2    
18.5    
18.7    
19.0    
19.3    
19.5    
19.8    
20.1    
20.3    
20.6    
20.8    
21.1    
21.4    
21.6    
21.9    
22.2    
22.4    
22.7    
23.0    
23.2    
23.5    
23.7    
24.0    
24.3    
24.5    
24.8    
25.1    
25.3    
25.6    
25.9    
26.1    
26.4    
26.6    
26.9    
27.2    
27.4    
27.7    
28.0    
28.2    
28.5    
28.8    
29.0    
29.3    
29.6    
29.8    
30.1    
30.3    
30.6    
30.9    
31.1    
31.4    
31.7    
31.9    
32.2    
32.5    
32.7    
33.0    
33.2    
33.5    
33.8    
34.0    
34.3    
34.6    
34.8    
35.1    
35.4    
35.6    
35.9    
36.1    
36.4    
36.7    
36.9    
37.2    
37.5    
37.7    
38.0    
38.3    
38.5    
38.8    
39.1    
39.3    
39.6    
39.8    
40.1    
40.4    
40.6    
40.9    
41.2    
41.4    
41.7    
42.0    
42.2    
42.5    
42.7    
43.0    
43.3    
43.5    
43.8    
44.1    
44.3    
44.6    
44.9    
45.1    
45.4    
45.6    
45.9    
46.2    
46.4    
46.7    
47.0    
47.2    
47.5    
47.8    
48.0    
48.3    
48.5    
48.8    
49.1    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
50.9    
51.2    
51.5    
51.7    
52.0    
52.2    
52.5    
52.8    
53.0    
53.3    
53.6    
53.8    
54.1    
54.4    
54.6    
54.9    
55.1    
55.4    
55.7    
55.9    
56.2    
56.5    
56.7    
57.0    
57.3    
57.5    
57.8    
58.0    
58.3    
58.6    
58.8    
59.1    
59.4    
59.6    
59.9    
60.2    
60.4    
60.7    
60.9    
61.2    
61.5    
61.7    
62.0    
62.3    
62.5    
62.8    
63.1    
63.3    
63.6    
63.9    
64.1    
64.4    
64.6    
64.9    
65.2    
65.4    
65.7    
66.0    
66.2    
66.5    
66.8    
67.0    
67.3    
67.5    
67.8    
68.1    
68.3    
68.6    
68.9    
69.1    
69.4    
69.7    
69.9    
70.2    
70.4    
70.7    
71.0    
71.2    
71.5    
71.8    
72.0    
72.3    
72.6    
72.8    
73.1    
73.4    
73.6    
73.9    
74.1    
74.4    
74.7    
74.9    
75.2    
75.5    
75.7    
76.0    
76.3    
76.5    
76.8    
77.0    
77.3    
77.6    
77.8    
78.1    
78.4    
78.6    
78.9    
79.2    
79.4    
79.7    
79.9    
80.2    
80.5    
80.7    
81.0    
81.3    
81.5    
81.8    
82.1    
82.3    
82.6    
82.8    
83.1    
83.4    
83.6    
83.9    
84.2    
84.4    
84.7    
85.0    
85.2    
85.5    
85.8    
86.0    
86.3    
86.5    
86.8    
87.1    
87.3    
87.6    
87.9    
88.1    
88.4    
88.7    
88.9    
89.2    
89.4    
89.7    
90.0    
90.2    
90.5    
90.8    
91.0    
91.3    
91.6    
91.8    
92.1    
92.3    
92.6    
92.9    
93.1    
93.4    
93.7    
93.9    
94.2    
94.5    
94.7    
95.0    
95.3    
95.5    
95.8    
96.0    
96.3    
96.6    
96.8    
97.1    
97.4    
97.6    
97.9    
98.2    
98.4    
98.7    
98.9    
99.2    
99.5    
99.7    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 12694, rend_intergenic: 7188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21427, rend_intergenic: 13037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22525, rend_intergenic: 22221  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35297, rend_intergenic: 34228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support