-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_27/scaffold_27_8374310-8541837

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_27-snap.1980-T1
Valid prediction for snap_scaffold_27-snap.1982-T1
Valid prediction for GeneMark_model.103119_t
Valid prediction for snap_scaffold_27-snap.1984-T1
Valid prediction for snap_scaffold_27-snap.1981-T1
Valid prediction for GlimmerHMM_glimmerT_59103-T1
Valid prediction for GlimmerHMM_glimmerT_59105-T1
Valid prediction for GeneMark_model.103138_t
Valid prediction for GeneMark_model.103102_t
Valid prediction for GeneMark_model.103131_t
Valid prediction for GlimmerHMM_glimmerT_59092-T1
Valid prediction for GeneMark_model.103112_t
Valid prediction for GeneMark_model.103122_t
Valid prediction for snap_scaffold_27-snap.1993-T1
Valid prediction for snap_scaffold_27-snap.2002-T1
Valid prediction for GeneMark_model.103105_t
Valid prediction for snap_scaffold_27-snap.1975-T1
Valid prediction for GeneMark_model.103120_t
Valid prediction for snap_scaffold_27-snap.1978-T1
Valid prediction for GlimmerHMM_glimmerT_59095-T1
Valid prediction for snap_scaffold_27-snap.1988-T1
Valid prediction for GlimmerHMM_glimmerT_59098-T1
Valid prediction for snap_scaffold_27-snap.1997-T1
Valid prediction for GeneMark_model.103141_t
Valid prediction for snap_scaffold_27-snap.2006-T1
Valid prediction for Augustus_model.g39357.t1
Valid prediction for snap_scaffold_27-snap.2009-T1
Valid prediction for GeneMark_model.103106_t
Valid prediction for snap_scaffold_27-snap.2000-T1
Valid prediction for GeneMark_model.103144_t
Valid prediction for GeneMark_model.103124_t
Valid prediction for GlimmerHMM_glimmerT_59102-T1
Valid prediction for GeneMark_model.103117_t
Valid prediction for snap_scaffold_27-snap.1966-T1
Valid prediction for GlimmerHMM_glimmerT_59099-T1
Valid prediction for snap_scaffold_27-snap.1967-T1
Valid prediction for snap_scaffold_27-snap.2008-T1
Valid prediction for snap_scaffold_27-snap.1994-T1
Valid prediction for GeneMark_model.103108_t
Valid prediction for GeneMark_model.103100_t
Valid prediction for GlimmerHMM_glimmerT_59097-T1
Valid prediction for snap_scaffold_27-snap.1985-T1
Valid prediction for snap_scaffold_27-snap.2004-T1
Valid prediction for Augustus_model.g39360.t1
Valid prediction for snap_scaffold_27-snap.1991-T1
Valid prediction for GeneMark_model.103148_t
Valid prediction for snap_scaffold_27-snap.1995-T1
Valid prediction for snap_scaffold_27-snap.1974-T1
Valid prediction for snap_scaffold_27-snap.2003-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.103110_t
Valid prediction for Augustus_model.g39355.t1
Valid prediction for GlimmerHMM_glimmerT_59100-T1
Valid prediction for GeneMark_model.103113_t
Valid prediction for GeneMark_model.103139_t
Valid prediction for GeneMark_model.103099_t
Valid prediction for GeneMark_model.103115_t
Valid prediction for GlimmerHMM_glimmerT_59088-T1
Valid prediction for snap_scaffold_27-snap.1972-T1
Valid prediction for snap_scaffold_27-snap.1986-T1
Valid prediction for GeneMark_model.103133_t
Valid prediction for snap_scaffold_27-snap.1969-T1
Valid prediction for GlimmerHMM_glimmerT_59106-T1
Valid prediction for GeneMark_model.103136_t
Valid prediction for snap_scaffold_27-snap.1998-T1
Valid prediction for snap_scaffold_27-snap.1968-T1
Valid prediction for GlimmerHMM_glimmerT_59094-T1
Valid prediction for GlimmerHMM_glimmerT_59101-T1
Valid prediction for Augustus_model.g39358.t1
Valid prediction for snap_scaffold_27-snap.1971-T1
Valid prediction for GeneMark_model.103126_t
Valid prediction for GeneMark_model.103111_t
Valid prediction for snap_scaffold_27-snap.1989-T1
Valid prediction for Augustus_model.g39359.t1
Valid prediction for snap_scaffold_27-snap.1976-T1
Valid prediction for GeneMark_model.103142_t
Valid prediction for GeneMark_model.103147_t
Valid prediction for GeneMark_model.103128_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59089-T1
Valid prediction for GlimmerHMM_glimmerT_59093-T1
Valid prediction for snap_scaffold_27-snap.1987-T1
Valid prediction for snap_scaffold_27-snap.2005-T1
Valid prediction for GeneMark_model.103135_t
Valid prediction for snap_scaffold_27-snap.1965-T1
Valid prediction for snap_scaffold_27-snap.2001-T1
Valid prediction for GeneMark_model.103146_t
Valid prediction for GeneMark_model.103121_t
Valid prediction for Augustus_model.g39353.t1
Valid prediction for GeneMark_model.103145_t
Valid prediction for snap_scaffold_27-snap.1996-T1
Valid prediction for Augustus_model.g39356.t1
Valid prediction for snap_scaffold_27-snap.1973-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_27-snap.2007-T1
Valid prediction for GlimmerHMM_glimmerT_59096-T1
Valid prediction for GeneMark_model.103127_t
Valid prediction for GlimmerHMM_glimmerT_59090-T1
Valid prediction for snap_scaffold_27-snap.1983-T1
Valid prediction for snap_scaffold_27-snap.1977-T1
Valid prediction for snap_scaffold_27-snap.1979-T1
Valid prediction for GeneMark_model.103134_t
Valid prediction for GeneMark_model.103132_t
Valid prediction for GeneMark_model.103116_t
Valid prediction for GeneMark_model.103118_t
Valid prediction for GeneMark_model.103129_t
Valid prediction for GeneMark_model.103114_t
Valid prediction for GeneMark_model.103125_t
Valid prediction for GeneMark_model.103101_t
Valid prediction for GlimmerHMM_glimmerT_59091-T1
Valid prediction for GeneMark_model.103140_t
Valid prediction for snap_scaffold_27-snap.1990-T1
Valid prediction for snap_scaffold_27-snap.1999-T1
Valid prediction for Augustus_model.g39354.t1
Valid prediction for GeneMark_model.103123_t
Valid prediction for GeneMark_model.103143_t
Valid prediction for GlimmerHMM_glimmerT_59104-T1
Valid prediction for GeneMark_model.103130_t
Valid prediction for snap_scaffold_27-snap.1970-T1
Valid prediction for GeneMark_model.103137_t
Valid prediction for GeneMark_model.103107_t
Valid prediction for GeneMark_model.103104_t
Valid prediction for snap_scaffold_27-snap.1992-T1
Valid prediction for GeneMark_model.103109_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17463, rend_intergenic: 6697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24538, rend_intergenic: 21610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35198, rend_intergenic: 26830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41355, rend_intergenic: 38017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66782, rend_intergenic: 59685  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73605, rend_intergenic: 67918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74995, rend_intergenic: 73611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89983, rend_intergenic: 85776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95330, rend_intergenic: 93129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114849, rend_intergenic: 95982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116048, rend_intergenic: 115135  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121553, rend_intergenic: 116501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143279, rend_intergenic: 140784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161629, rend_intergenic: 157512  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164355, rend_intergenic: 163399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 167528
-exon list size: 759


building trellis

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-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 17463, rend_intergenic: 6697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24538, rend_intergenic: 21610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35198, rend_intergenic: 26830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41355, rend_intergenic: 38017  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66782, rend_intergenic: 59685  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73605, rend_intergenic: 67918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74995, rend_intergenic: 73611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89983, rend_intergenic: 85776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95330, rend_intergenic: 93129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114849, rend_intergenic: 95982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116048, rend_intergenic: 115135  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121553, rend_intergenic: 116501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143279, rend_intergenic: 140784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161629, rend_intergenic: 157512  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164355, rend_intergenic: 163399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support