-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_27/scaffold_27_8158748-8376614

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.103062_t
Valid prediction for snap_scaffold_27-snap.1949-T1
Valid prediction for GeneMark_model.103061_t
Valid prediction for GeneMark_model.103075_t
Valid prediction for snap_scaffold_27-snap.1948-T1
Valid prediction for GlimmerHMM_glimmerT_59072-T1
Valid prediction for GeneMark_model.103082_t
Valid prediction for GeneMark_model.103092_t
Valid prediction for GlimmerHMM_glimmerT_59078-T1
Valid prediction for GlimmerHMM_glimmerT_59068-T1
Valid prediction for GlimmerHMM_glimmerT_59081-T1
Valid prediction for GeneMark_model.103085_t
Valid prediction for GlimmerHMM_glimmerT_59076-T1
Valid prediction for GeneMark_model.103067_t
Valid prediction for Augustus_model.g39349.t1
Valid prediction for GlimmerHMM_glimmerT_59071-T1
Valid prediction for snap_scaffold_27-snap.1931-T1
Valid prediction for GeneMark_model.103065_t
Valid prediction for GlimmerHMM_glimmerT_59070-T1
Valid prediction for snap_scaffold_27-snap.1932-T1
Valid prediction for GeneMark_model.103081_t
Valid prediction for GeneMark_model.103068_t
Valid prediction for GeneMark_model.103089_t
Valid prediction for GlimmerHMM_glimmerT_59075-T1
Valid prediction for snap_scaffold_27-snap.1936-T1
Valid prediction for GeneMark_model.103097_t
Valid prediction for GeneMark_model.103077_t
Valid prediction for snap_scaffold_27-snap.1943-T1
Valid prediction for snap_scaffold_27-snap.1961-T1
Valid prediction for snap_scaffold_27-snap.1954-T1
Valid prediction for snap_scaffold_27-snap.1926-T1
Valid prediction for GeneMark_model.103088_t
Valid prediction for snap_scaffold_27-snap.1925-T1
Valid prediction for GlimmerHMM_glimmerT_59080-T1
Valid prediction for snap_scaffold_27-snap.1940-T1
Valid prediction for GlimmerHMM_glimmerT_59085-T1
Valid prediction for GlimmerHMM_glimmerT_59082-T1
Valid prediction for snap_scaffold_27-snap.1964-T1
Valid prediction for GeneMark_model.103064_t
Valid prediction for GeneMark_model.103074_t
Valid prediction for snap_scaffold_27-snap.1958-T1
Valid prediction for snap_scaffold_27-snap.1963-T1
Valid prediction for GeneMark_model.103073_t
Valid prediction for snap_scaffold_27-snap.1957-T1
Valid prediction for GeneMark_model.103072_t
Valid prediction for snap_scaffold_27-snap.1927-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_59069-T1
Valid prediction for GeneMark_model.103094_t
Valid prediction for snap_scaffold_27-snap.1930-T1
Valid prediction for GeneMark_model.103079_t
Valid prediction for GeneMark_model.103070_t
Valid prediction for snap_scaffold_27-snap.1953-T1
Valid prediction for GlimmerHMM_glimmerT_59074-T1
Valid prediction for snap_scaffold_27-snap.1939-T1
Valid prediction for snap_scaffold_27-snap.1946-T1
Valid prediction for GlimmerHMM_glimmerT_59086-T1
Valid prediction for snap_scaffold_27-snap.1934-T1
Valid prediction for snap_scaffold_27-snap.1938-T1
Valid prediction for GeneMark_model.103057_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.103086_t
Valid prediction for snap_scaffold_27-snap.1945-T1
Valid prediction for snap_scaffold_27-snap.1962-T1
Valid prediction for GeneMark_model.103096_t
Valid prediction for Augustus_model.g39348.t1
Valid prediction for snap_scaffold_27-snap.1942-T1
Valid prediction for GlimmerHMM_glimmerT_59083-T1
Valid prediction for snap_scaffold_27-snap.1956-T1
Valid prediction for snap_scaffold_27-snap.1952-T1
Valid prediction for Augustus_model.g39352.t1
Valid prediction for GeneMark_model.103059_t
Valid prediction for snap_scaffold_27-snap.1937-T1
Valid prediction for GeneMark_model.103056_t
Valid prediction for snap_scaffold_27-snap.1951-T1
Valid prediction for snap_scaffold_27-snap.1941-T1
Valid prediction for GeneMark_model.103093_t
Valid prediction for GeneMark_model.103078_t
Valid prediction for GeneMark_model.103080_t
Valid prediction for snap_scaffold_27-snap.1959-T1
Valid prediction for snap_scaffold_27-snap.1960-T1
Valid prediction for GlimmerHMM_glimmerT_59087-T1
Valid prediction for snap_scaffold_27-snap.1935-T1
Valid prediction for GeneMark_model.103071_t
Valid prediction for GeneMark_model.103069_t
Valid prediction for snap_scaffold_27-snap.1955-T1
Valid prediction for Augustus_model.g39351.t1
Valid prediction for snap_scaffold_27-snap.1933-T1
Valid prediction for GlimmerHMM_glimmerT_59084-T1
Valid prediction for GeneMark_model.103087_t
Valid prediction for snap_scaffold_27-snap.1929-T1
Valid prediction for GeneMark_model.103066_t
Valid prediction for GeneMark_model.103083_t
Valid prediction for snap_scaffold_27-snap.1944-T1
Valid prediction for Augustus_model.g39350.t1
Valid prediction for GeneMark_model.103095_t
Valid prediction for GeneMark_model.103063_t
Valid prediction for GeneMark_model.103058_t
Valid prediction for GeneMark_model.103076_t
Valid prediction for snap_scaffold_27-snap.1947-T1
Valid prediction for GlimmerHMM_glimmerT_59079-T1
Valid prediction for GlimmerHMM_glimmerT_59073-T1
Valid prediction for GlimmerHMM_glimmerT_59077-T1
Valid prediction for snap_scaffold_27-snap.1928-T1
Valid prediction for GeneMark_model.103091_t
Valid prediction for GeneMark_model.103084_t
Valid prediction for GeneMark_model.103090_t
Valid prediction for snap_scaffold_27-snap.1950-T1
Valid prediction for GeneMark_model.103060_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 36044, rend_intergenic: 34616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43610, rend_intergenic: 38267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76735, rend_intergenic: 74870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115800, rend_intergenic: 112958  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136853, rend_intergenic: 132461  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193946, rend_intergenic: 187762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195745, rend_intergenic: 194490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204040, rend_intergenic: 201163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206172, rend_intergenic: 205021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213466, rend_intergenic: 208354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 217867
-exon list size: 507


building trellis

0.2    
0.4    
0.6    
0.8    
1.0    
1.2    
1.4    
1.6    
1.8    
2.0    
2.2    
2.4    
2.6    
2.8    
2.9    
3.1    
3.3    
3.5    
3.7    
3.9    
4.1    
4.3    
4.5    
4.7    
4.9    
5.1    
5.3    
5.5    
5.7    
5.9    
6.1    
6.3    
6.5    
6.7    
6.9    
7.1    
7.3    
7.5    
7.7    
7.9    
8.1    
8.3    
8.4    
8.6    
8.8    
9.0    
9.2    
9.4    
9.6    
9.8    
10.0    
10.2    
10.4    
10.6    
10.8    
11.0    
11.2    
11.4    
11.6    
11.8    
12.0    
12.2    
12.4    
12.6    
12.8    
13.0    
13.2    
13.4    
13.6    
13.8    
13.9    
14.1    
14.3    
14.5    
14.7    
14.9    
15.1    
15.3    
15.5    
15.7    
15.9    
16.1    
16.3    
16.5    
16.7    
16.9    
17.1    
17.3    
17.5    
17.7    
17.9    
18.1    
18.3    
18.5    
18.7    
18.9    
19.1    
19.3    
19.4    
19.6    
19.8    
20.0    
20.2    
20.4    
20.6    
20.8    
21.0    
21.2    
21.4    
21.6    
21.8    
22.0    
22.2    
22.4    
22.6    
22.8    
23.0    
23.2    
23.4    
23.6    
23.8    
24.0    
24.2    
24.4    
24.6    
24.8    
25.0    
25.1    
25.3    
25.5    
25.7    
25.9    
26.1    
26.3    
26.5    
26.7    
26.9    
27.1    
27.3    
27.5    
27.7    
27.9    
28.1    
28.3    
28.5    
28.7    
28.9    
29.1    
29.3    
29.5    
29.7    
29.9    
30.1    
30.3    
30.5    
30.6    
30.8    
31.0    
31.2    
31.4    
31.6    
31.8    
32.0    
32.2    
32.4    
32.6    
32.8    
33.0    
33.2    
33.4    
33.6    
33.8    
34.0    
34.2    
34.4    
34.6    
34.8    
35.0    
35.2    
35.4    
35.6    
35.8    
36.0    
36.1    
36.3    
36.5    
36.7    
36.9    
37.1    
37.3    
37.5    
37.7    
37.9    
38.1    
38.3    
38.5    
38.7    
38.9    
39.1    
39.3    
39.5    
39.7    
39.9    
40.1    
40.3    
40.5    
40.7    
40.9    
41.1    
41.3    
41.5    
41.7    
41.8    
42.0    
42.2    
42.4    
42.6    
42.8    
43.0    
43.2    
43.4    
43.6    
43.8    
44.0    
44.2    
44.4    
44.6    
44.8    
45.0    
45.2    
45.4    
45.6    
45.8    
46.0    
46.2    
46.4    
46.6    
46.8    
47.0    
47.2    
47.3    
47.5    
47.7    
47.9    
48.1    
48.3    
48.5    
48.7    
48.9    
49.1    
49.3    
49.5    
49.7    
49.9    
50.1    
50.3    
50.5    
50.7    
50.9    
51.1    
51.3    
51.5    
51.7    
51.9    
52.1    
52.3    
52.5    
52.7    
52.8    
53.0    
53.2    
53.4    
53.6    
53.8    
54.0    
54.2    
54.4    
54.6    
54.8    
55.0    
55.2    
55.4    
55.6    
55.8    
56.0    
56.2    
56.4    
56.6    
56.8    
57.0    
57.2    
57.4    
57.6    
57.8    
58.0    
58.2    
58.3    
58.5    
58.7    
58.9    
59.1    
59.3    
59.5    
59.7    
59.9    
60.1    
60.3    
60.5    
60.7    
60.9    
61.1    
61.3    
61.5    
61.7    
61.9    
62.1    
62.3    
62.5    
62.7    
62.9    
63.1    
63.3    
63.5    
63.7    
63.9    
64.0    
64.2    
64.4    
64.6    
64.8    
65.0    
65.2    
65.4    
65.6    
65.8    
66.0    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.4    
67.6    
67.8    
68.0    
68.2    
68.4    
68.6    
68.8    
69.0    
69.2    
69.4    
69.5    
69.7    
69.9    
70.1    
70.3    
70.5    
70.7    
70.9    
71.1    
71.3    
71.5    
71.7    
71.9    
72.1    
72.3    
72.5    
72.7    
72.9    
73.1    
73.3    
73.5    
73.7    
73.9    
74.1    
74.3    
74.5    
74.7    
74.9    
75.0    
75.2    
75.4    
75.6    
75.8    
76.0    
76.2    
76.4    
76.6    
76.8    
77.0    
77.2    
77.4    
77.6    
77.8    
78.0    
78.2    
78.4    
78.6    
78.8    
79.0    
79.2    
79.4    
79.6    
79.8    
80.0    
80.2    
80.4    
80.6    
80.7    
80.9    
81.1    
81.3    
81.5    
81.7    
81.9    
82.1    
82.3    
82.5    
82.7    
82.9    
83.1    
83.3    
83.5    
83.7    
83.9    
84.1    
84.3    
84.5    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.9    
86.1    
86.2    
86.4    
86.6    
86.8    
87.0    
87.2    
87.4    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.8    
89.0    
89.2    
89.4    
89.6    
89.8    
90.0    
90.2    
90.4    
90.6    
90.8    
91.0    
91.2    
91.4    
91.6    
91.7    
91.9    
92.1    
92.3    
92.5    
92.7    
92.9    
93.1    
93.3    
93.5    
93.7    
93.9    
94.1    
94.3    
94.5    
94.7    
94.9    
95.1    
95.3    
95.5    
95.7    
95.9    
96.1    
96.3    
96.5    
96.7    
96.9    
97.1    
97.2    
97.4    
97.6    
97.8    
98.0    
98.2    
98.4    
98.6    
98.8    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 19 predictions from path traversal
Error with prediction: snap lend_intergenic: 36044, rend_intergenic: 34616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43610, rend_intergenic: 38267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76735, rend_intergenic: 74870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115800, rend_intergenic: 112958  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136853, rend_intergenic: 132461  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193946, rend_intergenic: 187762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195745, rend_intergenic: 194490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204040, rend_intergenic: 201163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 206172, rend_intergenic: 205021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213466, rend_intergenic: 208354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 35193
-exon list size: 51


building trellis

1.9    
3.8    
5.7    
7.5    
9.4    
11.3    
13.2    
15.1    
17.0    
18.9    
20.8    
22.6    
24.5    
26.4    
28.3    
30.2    
32.1    
34.0    
35.8    
37.7    
39.6    
41.5    
43.4    
45.3    
47.2    
49.1    
50.9    
52.8    
54.7    
56.6    
58.5    
60.4    
62.3    
64.2    
66.0    
67.9    
69.8    
71.7    
73.6    
75.5    
77.4    
79.2    
81.1    
83.0    
84.9    
86.8    
88.7    
90.6    
92.5    
94.3    
96.2    
98.1    
-found 2 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 28142
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 27669
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 26936
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12968
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12884
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10128
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10040
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10012
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 12978 - 26936
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 207706 - 217867
-exon list size: 42


building trellis

2.3    
4.5    
6.8    
9.1    
11.4    
13.6    
15.9    
18.2    
20.5    
22.7    
25.0    
27.3    
29.5    
31.8    
34.1    
36.4    
38.6    
40.9    
43.2    
45.5    
47.7    
50.0    
52.3    
54.5    
56.8    
59.1    
61.4    
63.6    
65.9    
68.2    
70.5    
72.7    
75.0    
77.3    
79.5    
81.8    
84.1    
86.4    
88.6    
90.9    
93.2    
95.5    
97.7    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support