-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_27/scaffold_27_7921124-8165987

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.103052_t
Valid prediction for GeneMark_model.103023_t
Valid prediction for GeneMark_model.103046_t
Valid prediction for GeneMark_model.103041_t
Valid prediction for GeneMark_model.103044_t
Valid prediction for GeneMark_model.103030_t
Valid prediction for GlimmerHMM_glimmerT_59066-T1
Valid prediction for snap_scaffold_27-snap.1894-T1
Valid prediction for GeneMark_model.103022_t
Valid prediction for GeneMark_model.103055_t
Valid prediction for snap_scaffold_27-snap.1913-T1
Valid prediction for Augustus_model.g39347.t1
Valid prediction for snap_scaffold_27-snap.1905-T1
Valid prediction for GeneMark_model.103031_t
Valid prediction for Augustus_model.g39341.t1
Valid prediction for GeneMark_model.103049_t
Valid prediction for snap_scaffold_27-snap.1922-T1
Valid prediction for GeneMark_model.103021_t
Valid prediction for GeneMark_model.103039_t
Valid prediction for snap_scaffold_27-snap.1924-T1
Valid prediction for snap_scaffold_27-snap.1898-T1
Valid prediction for snap_scaffold_27-snap.1900-T1
Valid prediction for GlimmerHMM_glimmerT_59060-T1
Valid prediction for GeneMark_model.103051_t
Valid prediction for snap_scaffold_27-snap.1911-T1
Valid prediction for GeneMark_model.103034_t
Valid prediction for GlimmerHMM_glimmerT_59064-T1
Valid prediction for snap_scaffold_27-snap.1901-T1
Valid prediction for snap_scaffold_27-snap.1920-T1
Valid prediction for snap_scaffold_27-snap.1895-T1
Valid prediction for snap_scaffold_27-snap.1902-T1
Valid prediction for GeneMark_model.103048_t
Valid prediction for snap_scaffold_27-snap.1916-T1
Valid prediction for GeneMark_model.103037_t
Valid prediction for snap_scaffold_27-snap.1909-T1
Valid prediction for Augustus_model.g39342.t1
Valid prediction for GlimmerHMM_glimmerT_59057-T1
Valid prediction for GeneMark_model.103053_t
Valid prediction for GeneMark_model.103035_t
Valid prediction for GeneMark_model.103050_t
Valid prediction for GeneMark_model.103026_t
Valid prediction for snap_scaffold_27-snap.1893-T1
Valid prediction for GlimmerHMM_glimmerT_59063-T1
Valid prediction for snap_scaffold_27-snap.1923-T1
Valid prediction for snap_scaffold_27-snap.1907-T1
Valid prediction for GeneMark_model.103032_t
Valid prediction for GeneMark_model.103024_t
Valid prediction for GlimmerHMM_glimmerT_59058-T1
Valid prediction for Augustus_model.g39343.t1
Valid prediction for GeneMark_model.103043_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.103027_t
Valid prediction for snap_scaffold_27-snap.1904-T1
Valid prediction for GeneMark_model.103056_t
Valid prediction for GlimmerHMM_glimmerT_59062-T1
Valid prediction for snap_scaffold_27-snap.1897-T1
Valid prediction for GlimmerHMM_glimmerT_59059-T1
Valid prediction for GlimmerHMM_glimmerT_59055-T1
Valid prediction for GeneMark_model.103020_t
Valid prediction for GeneMark_model.103045_t
Valid prediction for GlimmerHMM_glimmerT_59054-T1
Valid prediction for GeneMark_model.103038_t
Valid prediction for GeneMark_model.103033_t
Valid prediction for GeneMark_model.103028_t
Valid prediction for snap_scaffold_27-snap.1921-T1
Valid prediction for snap_scaffold_27-snap.1906-T1
Valid prediction for snap_scaffold_27-snap.1903-T1
Valid prediction for snap_scaffold_27-snap.1918-T1
Valid prediction for GeneMark_model.103042_t
Valid prediction for snap_scaffold_27-snap.1899-T1
Valid prediction for GlimmerHMM_glimmerT_59065-T1
Valid prediction for snap_scaffold_27-snap.1908-T1
Valid prediction for snap_scaffold_27-snap.1912-T1
Valid prediction for snap_scaffold_27-snap.1896-T1
Valid prediction for GeneMark_model.103025_t
Valid prediction for snap_scaffold_27-snap.1917-T1
Valid prediction for Augustus_model.g39345.t1
Valid prediction for snap_scaffold_27-snap.1919-T1
Valid prediction for GeneMark_model.103036_t
Valid prediction for snap_scaffold_27-snap.1910-T1
Valid prediction for snap_scaffold_27-snap.1915-T1
Valid prediction for snap_scaffold_27-snap.1914-T1
Valid prediction for GeneMark_model.103040_t
Valid prediction for GlimmerHMM_glimmerT_59061-T1
Valid prediction for Augustus_model.g39346.t1
Valid prediction for Augustus_model.g39344.t1
Valid prediction for GeneMark_model.103054_t
Valid prediction for GlimmerHMM_glimmerT_59056-T1
Valid prediction for GeneMark_model.103047_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 27366, rend_intergenic: 26055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73704, rend_intergenic: 70856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104541, rend_intergenic: 101338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142444, rend_intergenic: 137475  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144204, rend_intergenic: 142683  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153851, rend_intergenic: 148500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195418, rend_intergenic: 194658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202127, rend_intergenic: 200352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212892, rend_intergenic: 207958  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 244864
-exon list size: 405


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.5    
1.7    
2.0    
2.2    
2.5    
2.7    
2.9    
3.2    
3.4    
3.7    
3.9    
4.2    
4.4    
4.7    
4.9    
5.2    
5.4    
5.7    
5.9    
6.1    
6.4    
6.6    
6.9    
7.1    
7.4    
7.6    
7.9    
8.1    
8.4    
8.6    
8.8    
9.1    
9.3    
9.6    
9.8    
10.1    
10.3    
10.6    
10.8    
11.1    
11.3    
11.5    
11.8    
12.0    
12.3    
12.5    
12.8    
13.0    
13.3    
13.5    
13.8    
14.0    
14.3    
14.5    
14.7    
15.0    
15.2    
15.5    
15.7    
16.0    
16.2    
16.5    
16.7    
17.0    
17.2    
17.4    
17.7    
17.9    
18.2    
18.4    
18.7    
18.9    
19.2    
19.4    
19.7    
19.9    
20.1    
20.4    
20.6    
20.9    
21.1    
21.4    
21.6    
21.9    
22.1    
22.4    
22.6    
22.9    
23.1    
23.3    
23.6    
23.8    
24.1    
24.3    
24.6    
24.8    
25.1    
25.3    
25.6    
25.8    
26.0    
26.3    
26.5    
26.8    
27.0    
27.3    
27.5    
27.8    
28.0    
28.3    
28.5    
28.7    
29.0    
29.2    
29.5    
29.7    
30.0    
30.2    
30.5    
30.7    
31.0    
31.2    
31.4    
31.7    
31.9    
32.2    
32.4    
32.7    
32.9    
33.2    
33.4    
33.7    
33.9    
34.2    
34.4    
34.6    
34.9    
35.1    
35.4    
35.6    
35.9    
36.1    
36.4    
36.6    
36.9    
37.1    
37.3    
37.6    
37.8    
38.1    
38.3    
38.6    
38.8    
39.1    
39.3    
39.6    
39.8    
40.0    
40.3    
40.5    
40.8    
41.0    
41.3    
41.5    
41.8    
42.0    
42.3    
42.5    
42.8    
43.0    
43.2    
43.5    
43.7    
44.0    
44.2    
44.5    
44.7    
45.0    
45.2    
45.5    
45.7    
45.9    
46.2    
46.4    
46.7    
46.9    
47.2    
47.4    
47.7    
47.9    
48.2    
48.4    
48.6    
48.9    
49.1    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.9    
51.1    
51.4    
51.6    
51.8    
52.1    
52.3    
52.6    
52.8    
53.1    
53.3    
53.6    
53.8    
54.1    
54.3    
54.5    
54.8    
55.0    
55.3    
55.5    
55.8    
56.0    
56.3    
56.5    
56.8    
57.0    
57.2    
57.5    
57.7    
58.0    
58.2    
58.5    
58.7    
59.0    
59.2    
59.5    
59.7    
60.0    
60.2    
60.4    
60.7    
60.9    
61.2    
61.4    
61.7    
61.9    
62.2    
62.4    
62.7    
62.9    
63.1    
63.4    
63.6    
63.9    
64.1    
64.4    
64.6    
64.9    
65.1    
65.4    
65.6    
65.8    
66.1    
66.3    
66.6    
66.8    
67.1    
67.3    
67.6    
67.8    
68.1    
68.3    
68.6    
68.8    
69.0    
69.3    
69.5    
69.8    
70.0    
70.3    
70.5    
70.8    
71.0    
71.3    
71.5    
71.7    
72.0    
72.2    
72.5    
72.7    
73.0    
73.2    
73.5    
73.7    
74.0    
74.2    
74.4    
74.7    
74.9    
75.2    
75.4    
75.7    
75.9    
76.2    
76.4    
76.7    
76.9    
77.1    
77.4    
77.6    
77.9    
78.1    
78.4    
78.6    
78.9    
79.1    
79.4    
79.6    
79.9    
80.1    
80.3    
80.6    
80.8    
81.1    
81.3    
81.6    
81.8    
82.1    
82.3    
82.6    
82.8    
83.0    
83.3    
83.5    
83.8    
84.0    
84.3    
84.5    
84.8    
85.0    
85.3    
85.5    
85.7    
86.0    
86.2    
86.5    
86.7    
87.0    
87.2    
87.5    
87.7    
88.0    
88.2    
88.5    
88.7    
88.9    
89.2    
89.4    
89.7    
89.9    
90.2    
90.4    
90.7    
90.9    
91.2    
91.4    
91.6    
91.9    
92.1    
92.4    
92.6    
92.9    
93.1    
93.4    
93.6    
93.9    
94.1    
94.3    
94.6    
94.8    
95.1    
95.3    
95.6    
95.8    
96.1    
96.3    
96.6    
96.8    
97.1    
97.3    
97.5    
97.8    
98.0    
98.3    
98.5    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 17 predictions from path traversal
Error with prediction: snap lend_intergenic: 27366, rend_intergenic: 26055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73704, rend_intergenic: 70856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104541, rend_intergenic: 101338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142444, rend_intergenic: 137475  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144204, rend_intergenic: 142683  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153851, rend_intergenic: 148500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195418, rend_intergenic: 194658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202127, rend_intergenic: 200352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212892, rend_intergenic: 207958  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 201527 - 244864
-exon list size: 72


building trellis

1.4    
2.7    
4.1    
5.4    
6.8    
8.1    
9.5    
10.8    
12.2    
13.5    
14.9    
16.2    
17.6    
18.9    
20.3    
21.6    
23.0    
24.3    
25.7    
27.0    
28.4    
29.7    
31.1    
32.4    
33.8    
35.1    
36.5    
37.8    
39.2    
40.5    
41.9    
43.2    
44.6    
45.9    
47.3    
48.6    
50.0    
51.4    
52.7    
54.1    
55.4    
56.8    
58.1    
59.5    
60.8    
62.2    
63.5    
64.9    
66.2    
67.6    
68.9    
70.3    
71.6    
73.0    
74.3    
75.7    
77.0    
78.4    
79.7    
81.1    
82.4    
83.8    
85.1    
86.5    
87.8    
89.2    
90.5    
91.9    
93.2    
94.6    
95.9    
97.3    
98.6    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 222612 - 244864
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 223281 - 244864
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 223851 - 244864
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 223851 - 237296
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 226410 - 237296
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support