-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_27/scaffold_27_6936475-7146691

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_58926-T1
Valid prediction for snap_scaffold_27-snap.1696-T1
Valid prediction for GeneMark_model.102754_t
Valid prediction for GeneMark_model.102733_t
Valid prediction for Augustus_model.g39249.t1
Valid prediction for GlimmerHMM_glimmerT_58909-T1
Valid prediction for GlimmerHMM_glimmerT_58927-T1
Valid prediction for snap_scaffold_27-snap.1681-T1
Valid prediction for GeneMark_model.102702_t
Valid prediction for snap_scaffold_27-snap.1675-T1
Valid prediction for GlimmerHMM_glimmerT_58940-T1
Valid prediction for snap_scaffold_27-snap.1701-T1
Valid prediction for snap_scaffold_27-snap.1690-T1
Valid prediction for GeneMark_model.102692_t
Valid prediction for Augustus_model.g39267.t1
Valid prediction for GeneMark_model.102741_t
Valid prediction for GlimmerHMM_glimmerT_58912-T1
Valid prediction for GlimmerHMM_glimmerT_58917-T1
Valid prediction for GeneMark_model.102750_t
Valid prediction for GeneMark_model.102728_t
Valid prediction for GeneMark_model.102751_t
Valid prediction for GeneMark_model.102704_t
Valid prediction for GeneMark_model.102689_t
Couldn't classify 22435, 22602
Sorry, prediction pasa_asmbl_36380.p1 fails validation.
(ATG)	 TC	15309-15467	GT	AGG
(GAG)	 AG	16139-16351	GT	CGG
(GAG)	 AG	16503-16646	GT	TTG
(GTG)	 AG	16878-17114	GT	ACG
(GTG)	 AG	17590-17718	GT	AGG
(GAG)	 AG	19870-19953	GT	AGG
(GCA)	 AG	20397-20516	GT	AGG
(GAG)	 AG	20954-21193	GT	AGG
(TCC)	 AG	21740-21952	GT	CGG
(CTG)	 AG	22085-22267	GT	AGG
(ATC)	 AG	22435-22602	GG	GGG
-recovered pasa_asmbl_36380.p1, initial, 15309, 15467
-recovered pasa_asmbl_36380.p1, internal, 16139, 16351
-recovered pasa_asmbl_36380.p1, internal, 16503, 16646
-recovered pasa_asmbl_36380.p1, internal, 16878, 17114
-recovered pasa_asmbl_36380.p1, internal, 17590, 17718
-recovered pasa_asmbl_36380.p1, internal, 19870, 19953
-recovered pasa_asmbl_36380.p1, internal, 20397, 20516
-recovered pasa_asmbl_36380.p1, internal, 20954, 21193
-recovered pasa_asmbl_36380.p1, internal, 21740, 21952
-recovered pasa_asmbl_36380.p1, internal, 22085, 22267
Valid prediction for snap_scaffold_27-snap.1684-T1
Valid prediction for snap_scaffold_27-snap.1698-T1
Valid prediction for GeneMark_model.102696_t
Valid prediction for Augustus_model.g39259.t1
Valid prediction for GlimmerHMM_glimmerT_58935-T1
Valid prediction for GeneMark_model.102735_t
Valid prediction for GeneMark_model.102719_t
Valid prediction for snap_scaffold_27-snap.1703-T1
Valid prediction for GeneMark_model.102744_t
Valid prediction for GeneMark_model.102721_t
Valid prediction for Augustus_model.g39258.t1
Valid prediction for GlimmerHMM_glimmerT_58936-T1
Valid prediction for snap_scaffold_27-snap.1700-T1
Valid prediction for GeneMark_model.102711_t
Valid prediction for GeneMark_model.102716_t
Valid prediction for GlimmerHMM_glimmerT_58933-T1
Valid prediction for GeneMark_model.102710_t
Couldn't classify 28148, 28206
Sorry, prediction GeneMark_model.102694_t fails validation.
(ATG)	 GG	28005-28093	GT	GTG
(AGA)	 AG	28120-28125	GT	GAG
(AGG)	 AG	28148-28206	GT	GAG
-recovered GeneMark_model.102694_t, initial, 28005, 28093
-recovered GeneMark_model.102694_t, internal, 28120, 28125
-recovered GeneMark_model.102694_t, internal, 28148, 28206
Valid prediction for GlimmerHMM_glimmerT_58929-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_58910-T1
Valid prediction for GlimmerHMM_glimmerT_58937-T1
Valid prediction for GeneMark_model.102699_t
Valid prediction for snap_scaffold_27-snap.1683-T1
Valid prediction for GeneMark_model.102722_t
Valid prediction for GeneMark_model.102723_t
Valid prediction for GeneMark_model.102698_t
Valid prediction for Augustus_model.g39250.t1
Valid prediction for GlimmerHMM_glimmerT_58911-T1
Valid prediction for snap_scaffold_27-snap.1666-T1
Valid prediction for GeneMark_model.102746_t
Valid prediction for GeneMark_model.102706_t
Valid prediction for GeneMark_model.102753_t
Valid prediction for GeneMark_model.102697_t
Valid prediction for GeneMark_model.102687_t
Valid prediction for GeneMark_model.102718_t
Valid prediction for GlimmerHMM_glimmerT_58922-T1
Valid prediction for snap_scaffold_27-snap.1691-T1
Valid prediction for snap_scaffold_27-snap.1695-T1
Valid prediction for GeneMark_model.102708_t
Valid prediction for GeneMark_model.102714_t
Valid prediction for GeneMark_model.102747_t
Valid prediction for GlimmerHMM_glimmerT_58934-T1
Valid prediction for GlimmerHMM_glimmerT_58920-T1
Valid prediction for snap_scaffold_27-snap.1678-T1
Valid prediction for Augustus_model.g39265.t1
Valid prediction for GlimmerHMM_glimmerT_58914-T1
Valid prediction for GeneMark_model.102739_t
Couldn't classify 13413, 13507
Sorry, prediction pasa_asmbl_36379.p1 fails validation.
(ATG)	 TC	9484-9615	GT	TTG
(GCA)	 AG	11461-11532	GT	AGG
(AAA)	 AG	11918-12019	GT	GGG
(TTG)	 AG	12446-12491	GT	AGG
(TTC)	 AG	12667-12763	GT	AGG
(AGA)	 AG	12882-12995	GT	TGG
(GAT)	 AG	13128-13219	GT	AGG
(CTG)	 AG	13413-13507	TT	GGT
-recovered pasa_asmbl_36379.p1, initial, 9484, 9615
add_exon() Sorry, pasa_asmbl_36379.p1 13128-13219-terminal-2 is invalid.
-recovered pasa_asmbl_36379.p1, terminal, 13128, 13219
-recovered pasa_asmbl_36379.p1, internal, 11461, 11532
-recovered pasa_asmbl_36379.p1, internal, 11918, 12019
-recovered pasa_asmbl_36379.p1, internal, 12446, 12491
-recovered pasa_asmbl_36379.p1, internal, 12667, 12763
-recovered pasa_asmbl_36379.p1, internal, 12882, 12995
-recovered pasa_asmbl_36379.p1, internal, 13128, 13219
Couldn't classify 39859, 39867
Sorry, prediction GeneMark_model.102695_t fails validation.
(AGT)	 AG	39859-39867	GT	GTG
(TGT)	 AG	39955-39963	GT	GTG
(TGT)	 AG	39987-40007	GT	GAG
(GGA)	 AG	41246-41401	GT	CAG
(ACT)	 AG	41423-41515	GT	CAG
(GAG)	 AG	41545-41616	GT	GAG
(AGA)	 AG	41703-41815	GT	CCG
(GGC)	 AG	42097-42172	GT	CAG
(GGA)	 AG	42203-42219	GT	ACG
(CGT)	 AG	42411-42474	GT	CTG
(AAA)	 AG	42615-42666	GG	GAG
-recovered GeneMark_model.102695_t, terminal, 42615, 42666
-recovered GeneMark_model.102695_t, internal, 39859, 39867
-recovered GeneMark_model.102695_t, internal, 39955, 39963
-recovered GeneMark_model.102695_t, internal, 39987, 40007
-recovered GeneMark_model.102695_t, internal, 41246, 41401
-recovered GeneMark_model.102695_t, internal, 41423, 41515
-recovered GeneMark_model.102695_t, internal, 41545, 41616
-recovered GeneMark_model.102695_t, internal, 41703, 41815
-recovered GeneMark_model.102695_t, internal, 42097, 42172
-recovered GeneMark_model.102695_t, internal, 42203, 42219
-recovered GeneMark_model.102695_t, internal, 42411, 42474
Valid prediction for snap_scaffold_27-snap.1672-T1
Valid prediction for GeneMark_model.102732_t
Valid prediction for GeneMark_model.102730_t
Valid prediction for snap_scaffold_27-snap.1704-T1
Valid prediction for CodingQuarry_transcript_41842-T1
Valid prediction for snap_scaffold_27-snap.1669-T1
Valid prediction for GlimmerHMM_glimmerT_58908-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.102715_t
Valid prediction for GlimmerHMM_glimmerT_58928-T1
Valid prediction for GeneMark_model.102703_t
Valid prediction for snap_scaffold_27-snap.1668-T1
Valid prediction for snap_scaffold_27-snap.1676-T1
Valid prediction for GeneMark_model.102737_t
Valid prediction for GeneMark_model.102748_t
Valid prediction for snap_scaffold_27-snap.1674-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g39257.t1
Valid prediction for snap_scaffold_27-snap.1680-T1
Valid prediction for GlimmerHMM_glimmerT_58930-T1
Valid prediction for GlimmerHMM_glimmerT_58918-T1
Valid prediction for snap_scaffold_27-snap.1682-T1
Valid prediction for GeneMark_model.102693_t
Valid prediction for GeneMark_model.102712_t
Valid prediction for GeneMark_model.102740_t
Valid prediction for snap_scaffold_27-snap.1664-T1
Valid prediction for snap_scaffold_27-snap.1670-T1
Valid prediction for GlimmerHMM_glimmerT_58924-T1
Valid prediction for GlimmerHMM_glimmerT_58916-T1
Valid prediction for snap_scaffold_27-snap.1673-T1
Valid prediction for GeneMark_model.102731_t
Valid prediction for GeneMark_model.102749_t
Valid prediction for snap_scaffold_27-snap.1699-T1
Valid prediction for Augustus_model.g39251.t1
Valid prediction for GeneMark_model.102727_t
Valid prediction for Augustus_model.g39255.t1
Valid prediction for snap_scaffold_27-snap.1687-T1
Valid prediction for GlimmerHMM_glimmerT_58925-T1
Valid prediction for GeneMark_model.102707_t
Valid prediction for GlimmerHMM_glimmerT_58915-T1
Valid prediction for GlimmerHMM_glimmerT_58932-T1
Valid prediction for GlimmerHMM_glimmerT_58921-T1
Valid prediction for snap_scaffold_27-snap.1679-T1
Valid prediction for Augustus_model.g39256.t1
Valid prediction for Augustus_model.g39261.t1
Valid prediction for snap_scaffold_27-snap.1667-T1
Valid prediction for Augustus_model.g39254.t1
Valid prediction for snap_scaffold_27-snap.1688-T1
Valid prediction for GeneMark_model.102717_t
Valid prediction for Augustus_model.g39266.t1
Valid prediction for GeneMark_model.102705_t
Valid prediction for GeneMark_model.102729_t
Valid prediction for snap_scaffold_27-snap.1692-T1
Valid prediction for GeneMark_model.102691_t
Valid prediction for GeneMark_model.102724_t
Valid prediction for GeneMark_model.102720_t
Valid prediction for Augustus_model.g39252.t1
Valid prediction for snap_scaffold_27-snap.1685-T1
Valid prediction for GlimmerHMM_glimmerT_58939-T1
Valid prediction for GlimmerHMM_glimmerT_58919-T1
Valid prediction for GlimmerHMM_glimmerT_58913-T1
Valid prediction for snap_scaffold_27-snap.1702-T1
Valid prediction for snap_scaffold_27-snap.1694-T1
Valid prediction for GeneMark_model.102736_t
Valid prediction for GeneMark_model.102690_t
Valid prediction for GeneMark_model.102755_t
Valid prediction for GeneMark_model.102743_t
Valid prediction for snap_scaffold_27-snap.1677-T1
Valid prediction for GeneMark_model.102700_t
Valid prediction for snap_scaffold_27-snap.1693-T1
Valid prediction for GeneMark_model.102752_t
Valid prediction for Augustus_model.g39260.t1
Valid prediction for Augustus_model.g39264.t1
Valid prediction for snap_scaffold_27-snap.1697-T1
Valid prediction for Augustus_model.g39253.t1
Valid prediction for GeneMark_model.102709_t
Valid prediction for GeneMark_model.102701_t
Valid prediction for snap_scaffold_27-snap.1671-T1
Valid prediction for snap_scaffold_27-snap.1665-T1
Valid prediction for GeneMark_model.102713_t
Valid prediction for GlimmerHMM_glimmerT_58923-T1
Valid prediction for GeneMark_model.102688_t
Valid prediction for Augustus_model.g39263.t1
Valid prediction for GeneMark_model.102726_t
Valid prediction for snap_scaffold_27-snap.1686-T1
Valid prediction for Augustus_model.g39262.t1
Valid prediction for GeneMark_model.102725_t
Valid prediction for GeneMark_model.102738_t
Valid prediction for GlimmerHMM_glimmerT_58931-T1
Valid prediction for GeneMark_model.102756_t
Valid prediction for GeneMark_model.102745_t
Valid prediction for GlimmerHMM_glimmerT_58938-T1
Valid prediction for GeneMark_model.102734_t
Valid prediction for snap_scaffold_27-snap.1689-T1
Valid prediction for GeneMark_model.102742_t
Valid prediction for snap_scaffold_27-snap.1705-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13765, rend_intergenic: 11118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24152, rend_intergenic: 14247  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25560, rend_intergenic: 24307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42217, rend_intergenic: 26460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51117, rend_intergenic: 42617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69362, rend_intergenic: 51449  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80819, rend_intergenic: 77379  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83387, rend_intergenic: 81672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84541, rend_intergenic: 83482  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107258, rend_intergenic: 95668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111374, rend_intergenic: 107360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125908, rend_intergenic: 121402  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160559, rend_intergenic: 146837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160965, rend_intergenic: 160666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179021, rend_intergenic: 161872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184394, rend_intergenic: 181689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200266, rend_intergenic: 184603  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209288, rend_intergenic: 200999  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 210217
-exon list size: 931


building trellis

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46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 52 predictions from path traversal
Error with prediction: snap lend_intergenic: 13765, rend_intergenic: 11118  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24152, rend_intergenic: 14247  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25560, rend_intergenic: 24307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42217, rend_intergenic: 26460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51117, rend_intergenic: 42617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69362, rend_intergenic: 51449  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80819, rend_intergenic: 77379  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83387, rend_intergenic: 81672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84541, rend_intergenic: 83482  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107258, rend_intergenic: 95668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111374, rend_intergenic: 107360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125908, rend_intergenic: 121402  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160559, rend_intergenic: 146837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160965, rend_intergenic: 160666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179021, rend_intergenic: 161872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184394, rend_intergenic: 181689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200266, rend_intergenic: 184603  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209288, rend_intergenic: 200999  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support