-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_27/scaffold_27_684480-900358

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_27-snap.198-T1
Valid prediction for Augustus_model.g38604.t1
Valid prediction for GlimmerHMM_glimmerT_57935-T1
Valid prediction for GeneMark_model.100860_t
Valid prediction for GeneMark_model.100910_t
Valid prediction for snap_scaffold_27-snap.181-T1
Valid prediction for snap_scaffold_27-snap.185-T1
Valid prediction for GeneMark_model.100862_t
Valid prediction for GlimmerHMM_glimmerT_57943-T1
Valid prediction for snap_scaffold_27-snap.164-T1
Valid prediction for snap_scaffold_27-snap.195-T1
Valid prediction for GeneMark_model.100876_t
Valid prediction for GeneMark_model.100897_t
Valid prediction for GeneMark_model.100878_t
Valid prediction for Augustus_model.g38606.t1
Valid prediction for GeneMark_model.100886_t
Valid prediction for Augustus_model.g38603.t1
Valid prediction for Augustus_model.g38599.t1
Valid prediction for GlimmerHMM_glimmerT_57946-T1
Valid prediction for snap_scaffold_27-snap.161-T1
Valid prediction for GlimmerHMM_glimmerT_57931-T1
Valid prediction for GeneMark_model.100880_t
Valid prediction for GeneMark_model.100872_t
Valid prediction for snap_scaffold_27-snap.179-T1
Valid prediction for GlimmerHMM_glimmerT_57947-T1
Valid prediction for snap_scaffold_27-snap.182-T1
Valid prediction for snap_scaffold_27-snap.192-T1
Valid prediction for snap_scaffold_27-snap.177-T1
Valid prediction for GlimmerHMM_glimmerT_57953-T1
Valid prediction for GeneMark_model.100893_t
Valid prediction for snap_scaffold_27-snap.190-T1
Valid prediction for snap_scaffold_27-snap.165-T1
Valid prediction for GeneMark_model.100906_t
Valid prediction for snap_scaffold_27-snap.180-T1
Valid prediction for GeneMark_model.100859_t
Valid prediction for Augustus_model.g38600.t1
Valid prediction for snap_scaffold_27-snap.163-T1
Valid prediction for GlimmerHMM_glimmerT_57942-T1
Valid prediction for snap_scaffold_27-snap.196-T1
Valid prediction for Augustus_model.g38598.t1
Valid prediction for snap_scaffold_27-snap.184-T1
Valid prediction for Augustus_model.g38605.t1
Valid prediction for snap_scaffold_27-snap.172-T1
Valid prediction for GeneMark_model.100874_t
Valid prediction for GlimmerHMM_glimmerT_57950-T1
Valid prediction for Augustus_model.g38597.t1
Valid prediction for GeneMark_model.100899_t
Valid prediction for GeneMark_model.100905_t
Valid prediction for GeneMark_model.100867_t
Valid prediction for GeneMark_model.100889_t
Valid prediction for GeneMark_model.100870_t
Valid prediction for GeneMark_model.100908_t
Valid prediction for GeneMark_model.100901_t
Valid prediction for GlimmerHMM_glimmerT_57936-T1
Valid prediction for snap_scaffold_27-snap.199-T1
Valid prediction for GeneMark_model.100884_t
Valid prediction for snap_scaffold_27-snap.194-T1
Valid prediction for GeneMark_model.100882_t
Valid prediction for GlimmerHMM_glimmerT_57939-T1
Valid prediction for GlimmerHMM_glimmerT_57948-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.100898_t
Valid prediction for GlimmerHMM_glimmerT_57944-T1
Valid prediction for snap_scaffold_27-snap.175-T1
Valid prediction for GlimmerHMM_glimmerT_57949-T1
Valid prediction for GeneMark_model.100911_t
Valid prediction for snap_scaffold_27-snap.178-T1
Valid prediction for snap_scaffold_27-snap.202-T1
Valid prediction for snap_scaffold_27-snap.173-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_57929-T1
Valid prediction for snap_scaffold_27-snap.186-T1
Valid prediction for GeneMark_model.100869_t
Valid prediction for GlimmerHMM_glimmerT_57933-T1
Valid prediction for snap_scaffold_27-snap.174-T1
Valid prediction for Augustus_model.g38601.t1
Valid prediction for GeneMark_model.100883_t
Valid prediction for GeneMark_model.100861_t
Valid prediction for GeneMark_model.100895_t
Valid prediction for GeneMark_model.100888_t
Valid prediction for GlimmerHMM_glimmerT_57945-T1
Valid prediction for GlimmerHMM_glimmerT_57951-T1
Valid prediction for GlimmerHMM_glimmerT_57930-T1
Valid prediction for GeneMark_model.100879_t
Valid prediction for snap_scaffold_27-snap.170-T1
Valid prediction for GeneMark_model.100894_t
Valid prediction for GeneMark_model.100903_t
Valid prediction for snap_scaffold_27-snap.166-T1
Valid prediction for GeneMark_model.100892_t
Valid prediction for GeneMark_model.100866_t
Valid prediction for snap_scaffold_27-snap.160-T1
Valid prediction for GeneMark_model.100890_t
Valid prediction for snap_scaffold_27-snap.171-T1
Valid prediction for GeneMark_model.100887_t
Valid prediction for GlimmerHMM_glimmerT_57940-T1
Valid prediction for snap_scaffold_27-snap.201-T1
Valid prediction for GlimmerHMM_glimmerT_57932-T1
Valid prediction for snap_scaffold_27-snap.176-T1
Valid prediction for GeneMark_model.100900_t
Valid prediction for GlimmerHMM_glimmerT_57952-T1
Valid prediction for snap_scaffold_27-snap.168-T1
Valid prediction for GeneMark_model.100863_t
Valid prediction for GlimmerHMM_glimmerT_57938-T1
Valid prediction for snap_scaffold_27-snap.167-T1
Valid prediction for GeneMark_model.100909_t
Valid prediction for GlimmerHMM_glimmerT_57934-T1
Valid prediction for snap_scaffold_27-snap.197-T1
Valid prediction for Augustus_model.g38596.t1
Valid prediction for GeneMark_model.100891_t
Valid prediction for GlimmerHMM_glimmerT_57954-T1
Valid prediction for snap_scaffold_27-snap.191-T1
Valid prediction for snap_scaffold_27-snap.200-T1
Valid prediction for GeneMark_model.100871_t
Valid prediction for GlimmerHMM_glimmerT_57937-T1
Valid prediction for GeneMark_model.100864_t
Valid prediction for snap_scaffold_27-snap.183-T1
Valid prediction for snap_scaffold_27-snap.187-T1
Valid prediction for GeneMark_model.100875_t
Valid prediction for snap_scaffold_27-snap.189-T1
Valid prediction for snap_scaffold_27-snap.188-T1
Valid prediction for GeneMark_model.100907_t
Valid prediction for snap_scaffold_27-snap.162-T1
Valid prediction for GeneMark_model.100896_t
Valid prediction for GlimmerHMM_glimmerT_57941-T1
Valid prediction for Augustus_model.g38602.t1
Valid prediction for GeneMark_model.100858_t
Valid prediction for GeneMark_model.100868_t
Valid prediction for GeneMark_model.100881_t
Valid prediction for snap_scaffold_27-snap.169-T1
Valid prediction for GeneMark_model.100877_t
Valid prediction for GeneMark_model.100873_t
Valid prediction for snap_scaffold_27-snap.193-T1
Valid prediction for GeneMark_model.100885_t
Valid prediction for GeneMark_model.100904_t
Valid prediction for GeneMark_model.100902_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16860, rend_intergenic: 6705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18248, rend_intergenic: 18100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57804, rend_intergenic: 31065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65133, rend_intergenic: 62286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95924, rend_intergenic: 90311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99423, rend_intergenic: 96222  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129079, rend_intergenic: 127552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129670, rend_intergenic: 129134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146355, rend_intergenic: 134283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178429, rend_intergenic: 174640  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199253, rend_intergenic: 198234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211491, rend_intergenic: 201437  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 215879
-exon list size: 682


building trellis

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-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 16860, rend_intergenic: 6705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18248, rend_intergenic: 18100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57804, rend_intergenic: 31065  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65133, rend_intergenic: 62286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95924, rend_intergenic: 90311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99423, rend_intergenic: 96222  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129079, rend_intergenic: 127552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129670, rend_intergenic: 129134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146355, rend_intergenic: 134283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178429, rend_intergenic: 174640  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199253, rend_intergenic: 198234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211491, rend_intergenic: 201437  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 13120
-exon list size: 40


building trellis

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61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
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78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12326
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support