-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_27/scaffold_27_5207418-5438197 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.102174_t Valid prediction for Augustus_model.g39103.t1 Valid prediction for snap_scaffold_27-snap.1301-T1 Valid prediction for GeneMark_model.102127_t Valid prediction for snap_scaffold_27-snap.1265-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.102144_t Valid prediction for snap_scaffold_27-snap.1276-T1 Valid prediction for snap_scaffold_27-snap.1236-T1 Valid prediction for GlimmerHMM_glimmerT_58674-T1 Valid prediction for snap_scaffold_27-snap.1254-T1 Valid prediction for GlimmerHMM_glimmerT_58687-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.102098_t Valid prediction for GlimmerHMM_glimmerT_58680-T1 Valid prediction for GeneMark_model.102150_t Valid prediction for Augustus_model.g39110.t1 Valid prediction for GeneMark_model.102137_t Valid prediction for GeneMark_model.102161_t Valid prediction for GlimmerHMM_glimmerT_58675-T1 Valid prediction for GeneMark_model.102176_t Valid prediction for GeneMark_model.102084_t Valid prediction for GeneMark_model.102113_t Valid prediction for GeneMark_model.102153_t Valid prediction for Augustus_model.g39099.t1 Valid prediction for GlimmerHMM_glimmerT_58673-T1 Valid prediction for GeneMark_model.102124_t Valid prediction for snap_scaffold_27-snap.1274-T1 Valid prediction for snap_scaffold_27-snap.1298-T1 Valid prediction for snap_scaffold_27-snap.1278-T1 Valid prediction for GlimmerHMM_glimmerT_58690-T1 Valid prediction for GeneMark_model.102092_t Valid prediction for snap_scaffold_27-snap.1261-T1 Valid prediction for snap_scaffold_27-snap.1240-T1 Valid prediction for snap_scaffold_27-snap.1266-T1 Valid prediction for Augustus_model.g39102.t1 Valid prediction for snap_scaffold_27-snap.1303-T1 Valid prediction for snap_scaffold_27-snap.1279-T1 Valid prediction for GlimmerHMM_glimmerT_58702-T1 Valid prediction for GeneMark_model.102094_t Valid prediction for snap_scaffold_27-snap.1238-T1 Valid prediction for GeneMark_model.102115_t Valid prediction for snap_scaffold_27-snap.1258-T1 Valid prediction for GlimmerHMM_glimmerT_58696-T1 Valid prediction for GeneMark_model.102165_t Valid prediction for snap_scaffold_27-snap.1293-T1 Valid prediction for GeneMark_model.102142_t Valid prediction for snap_scaffold_27-snap.1259-T1 Valid prediction for snap_scaffold_27-snap.1235-T1 Valid prediction for GeneMark_model.102169_t Valid prediction for GeneMark_model.102134_t Valid prediction for GlimmerHMM_glimmerT_58682-T1 Valid prediction for snap_scaffold_27-snap.1270-T1 Valid prediction for snap_scaffold_27-snap.1251-T1 Valid prediction for GlimmerHMM_glimmerT_58685-T1 Valid prediction for snap_scaffold_27-snap.1252-T1 Valid prediction for snap_scaffold_27-snap.1250-T1 Valid prediction for Augustus_model.g39106.t1 Valid prediction for GeneMark_model.102140_t Valid prediction for GlimmerHMM_glimmerT_58695-T1 Valid prediction for GeneMark_model.102104_t Valid prediction for GlimmerHMM_glimmerT_58676-T1 Valid prediction for GeneMark_model.102178_t Valid prediction for GeneMark_model.102163_t Valid prediction for snap_scaffold_27-snap.1295-T1 Valid prediction for snap_scaffold_27-snap.1269-T1 Valid prediction for GeneMark_model.102108_t Valid prediction for GeneMark_model.102135_t Valid prediction for snap_scaffold_27-snap.1244-T1 Valid prediction for GlimmerHMM_glimmerT_58691-T1 Valid prediction for GeneMark_model.102138_t Valid prediction for snap_scaffold_27-snap.1273-T1 Couldn't classify 214309, 214405 Sorry, prediction pasa_asmbl_36518.p1 fails validation. (GCG) GG 214309-214405 GT AGG (GTG) AG 214522-215137 GT TGG (CGC) AG 215369-215453 GT AGG (ACG) AG 215607-215771 CT AAC -recovered pasa_asmbl_36518.p1, terminal, 215607, 215771 -recovered pasa_asmbl_36518.p1, internal, 214522, 215137 -recovered pasa_asmbl_36518.p1, internal, 215369, 215453 Valid prediction for Augustus_model.g39097.t1 Valid prediction for GlimmerHMM_glimmerT_58688-T1 Valid prediction for GeneMark_model.102148_t Valid prediction for GlimmerHMM_glimmerT_58684-T1 Valid prediction for snap_scaffold_27-snap.1249-T1 Valid prediction for GeneMark_model.102111_t Valid prediction for GeneMark_model.102155_t Valid prediction for GeneMark_model.102164_t Valid prediction for GeneMark_model.102132_t Valid prediction for snap_scaffold_27-snap.1283-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_58694-T1 Valid prediction for GeneMark_model.102106_t Valid prediction for snap_scaffold_27-snap.1271-T1 Valid prediction for GeneMark_model.102102_t Valid prediction for snap_scaffold_27-snap.1260-T1 Valid prediction for GeneMark_model.102086_t Valid prediction for snap_scaffold_27-snap.1245-T1 Valid prediction for snap_scaffold_27-snap.1290-T1 Valid prediction for GeneMark_model.102119_t Valid prediction for Augustus_model.g39096.t1 Couldn't classify 212813, 212838 Couldn't classify 213836, 213874 Sorry, prediction pasa_asmbl_36547.p1 fails validation. (CTG) AG 212813-212838 GT AGG (AGA) AG 213024-213143 GT TGG (TTA) AG 213346-213556 GT TGG (GCC) AG 213836-213874 GT GCG -recovered pasa_asmbl_36547.p1, internal, 212813, 212838 -recovered pasa_asmbl_36547.p1, internal, 213024, 213143 -recovered pasa_asmbl_36547.p1, internal, 213346, 213556 -recovered pasa_asmbl_36547.p1, internal, 213836, 213874 Valid prediction for GlimmerHMM_glimmerT_58706-T1 Valid prediction for GeneMark_model.102173_t Valid prediction for snap_scaffold_27-snap.1291-T1 Valid prediction for GeneMark_model.102117_t Valid prediction for snap_scaffold_27-snap.1284-T1 Valid prediction for GlimmerHMM_glimmerT_58677-T1 Valid prediction for GeneMark_model.102128_t Valid prediction for GeneMark_model.102146_t Valid prediction for GlimmerHMM_glimmerT_58697-T1 Valid prediction for GlimmerHMM_glimmerT_58701-T1 Valid prediction for GlimmerHMM_glimmerT_58681-T1 Valid prediction for GlimmerHMM_glimmerT_58683-T1 Valid prediction for GeneMark_model.102101_t Valid prediction for GeneMark_model.102180_t Valid prediction for snap_scaffold_27-snap.1288-T1 Valid prediction for GeneMark_model.102171_t Valid prediction for snap_scaffold_27-snap.1300-T1 Valid prediction for GlimmerHMM_glimmerT_58707-T1 Valid prediction for GeneMark_model.102089_t Valid prediction for snap_scaffold_27-snap.1263-T1 Valid prediction for GeneMark_model.102167_t Valid prediction for snap_scaffold_27-snap.1286-T1 Valid prediction for GeneMark_model.102121_t Valid prediction for snap_scaffold_27-snap.1237-T1 Valid prediction for GeneMark_model.102096_t Valid prediction for GeneMark_model.102126_t Valid prediction for GeneMark_model.102130_t Valid prediction for Augustus_model.g39107.t1 Valid prediction for Augustus_model.g39108.t1 Valid prediction for snap_scaffold_27-snap.1255-T1 Valid prediction for GlimmerHMM_glimmerT_58678-T1 Valid prediction for snap_scaffold_27-snap.1247-T1 Valid prediction for GeneMark_model.102157_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.102112_t Valid prediction for pasa_asmbl_36964.p1 Valid prediction for GeneMark_model.102133_t Valid prediction for CodingQuarry_transcript_41805-T1 Valid prediction for GeneMark_model.102181_t Valid prediction for snap_scaffold_27-snap.1275-T1 Valid prediction for GeneMark_model.102149_t Valid prediction for Augustus_model.g39100.t1 Valid prediction for GeneMark_model.102091_t Valid prediction for snap_scaffold_27-snap.1262-T1 Valid prediction for snap_scaffold_27-snap.1304-T1 Valid prediction for GeneMark_model.102095_t Valid prediction for GlimmerHMM_glimmerT_58670-T1 Valid prediction for GlimmerHMM_glimmerT_58703-T1 Valid prediction for snap_scaffold_27-snap.1297-T1 Valid prediction for GeneMark_model.102179_t Valid prediction for snap_scaffold_27-snap.1296-T1 Valid prediction for snap_scaffold_27-snap.1264-T1 Valid prediction for CodingQuarry_transcript_41807-T1 Valid prediction for HiQ_model.g39111.t1 Valid prediction for GeneMark_model.102152_t Couldn't classify 1845, 1913 Sorry, prediction pasa_asmbl_36966.p1 fails validation. (CAG) AA 1845-1913 GT CTG (GGC) AG 2197-2331 GT AGG (GTG) AG 3114-3272 GT AGG (GTG) AG 4010-4133 GT AGG (ATG) AG 4246-4331 GT AGG (GCC) AG 4520-4621 GT AGG (GAC) AG 4743-4882 GT CAG (GAT) AG 5056-5128 GT GGG (GCG) AG 5530-5583 GT AGG (GCT) AG 6059-6160 CT GAC add_exon() Sorry, pasa_asmbl_36966.p1 4246-4331-initial-1 is invalid. -recovered pasa_asmbl_36966.p1, initial, 4246, 4331 -recovered pasa_asmbl_36966.p1, terminal, 6059, 6160 -recovered pasa_asmbl_36966.p1, internal, 2197, 2331 -recovered pasa_asmbl_36966.p1, internal, 3114, 3272 -recovered pasa_asmbl_36966.p1, internal, 4010, 4133 -recovered pasa_asmbl_36966.p1, internal, 4246, 4331 -recovered pasa_asmbl_36966.p1, internal, 4520, 4621 -recovered pasa_asmbl_36966.p1, internal, 4743, 4882 -recovered pasa_asmbl_36966.p1, internal, 5056, 5128 -recovered pasa_asmbl_36966.p1, internal, 5530, 5583 Valid prediction for Augustus_model.g39109.t1 Valid prediction for GeneMark_model.102100_t Valid prediction for GeneMark_model.102131_t Valid prediction for HiQ_model.g39112.t1 Valid prediction for GeneMark_model.102105_t Valid prediction for Augustus_model.g39101.t1 Valid prediction for snap_scaffold_27-snap.1302-T1 Valid prediction for GeneMark_model.102090_t Valid prediction for snap_scaffold_27-snap.1257-T1 Valid prediction for snap_scaffold_27-snap.1241-T1 Valid prediction for GeneMark_model.102147_t Valid prediction for snap_scaffold_27-snap.1267-T1 Valid prediction for GlimmerHMM_glimmerT_58689-T1 Valid prediction for GeneMark_model.102109_t Valid prediction for snap_scaffold_27-snap.1289-T1 Valid prediction for snap_scaffold_27-snap.1272-T1 Valid prediction for GeneMark_model.102136_t Valid prediction for GlimmerHMM_glimmerT_58698-T1 Valid prediction for snap_scaffold_27-snap.1242-T1 Valid prediction for snap_scaffold_27-snap.1294-T1 Valid prediction for Augustus_model.g39104.t1 Valid prediction for GeneMark_model.102110_t Valid prediction for Augustus_model.g39098.t1 Valid prediction for snap_scaffold_27-snap.1268-T1 Couldn't classify 222720, 222821 Sorry, prediction pasa_asmbl_36955.p2 fails validation. (GAT) AG 222720-222821 GT CGG (GGC) AG 225303-225390 GT AGG (GGT) AG 226324-226443 GT GGG (AGG) AG 227295-227341 TG GAT -recovered pasa_asmbl_36955.p2, terminal, 227295, 227341 -recovered pasa_asmbl_36955.p2, internal, 222720, 222821 -recovered pasa_asmbl_36955.p2, internal, 225303, 225390 -recovered pasa_asmbl_36955.p2, internal, 226324, 226443 Valid prediction for GlimmerHMM_glimmerT_58686-T1 Valid prediction for GeneMark_model.102116_t Valid prediction for GeneMark_model.102154_t Valid prediction for snap_scaffold_27-snap.1277-T1 Valid prediction for GeneMark_model.102118_t Valid prediction for GeneMark_model.102099_t Valid prediction for GeneMark_model.102159_t Valid prediction for GeneMark_model.102177_t Couldn't classify 117170, 117511 Sorry, prediction pasa_asmbl_36958.p1 fails validation. (CTC) GA 117170-117511 TC CCT Valid prediction for GeneMark_model.102168_t Valid prediction for snap_scaffold_27-snap.1292-T1 Valid prediction for snap_scaffold_27-snap.1287-T1 Valid prediction for GeneMark_model.102129_t Valid prediction for GeneMark_model.102093_t Valid prediction for Augustus_model.g39095.t1 Valid prediction for Augustus_model.g39105.t1 Valid prediction for GeneMark_model.102172_t Valid prediction for GeneMark_model.102087_t Valid prediction for GeneMark_model.102143_t Valid prediction for GeneMark_model.102162_t Valid prediction for GeneMark_model.102088_t Valid prediction for GeneMark_model.102151_t Valid prediction for GeneMark_model.102170_t Valid prediction for GeneMark_model.102120_t Valid prediction for GeneMark_model.102085_t Valid prediction for GeneMark_model.102160_t Valid prediction for GlimmerHMM_glimmerT_58704-T1 Valid prediction for GeneMark_model.102123_t Valid prediction for GeneMark_model.102156_t Valid prediction for snap_scaffold_27-snap.1256-T1 Valid prediction for GeneMark_model.102175_t Valid prediction for snap_scaffold_27-snap.1281-T1 Valid prediction for snap_scaffold_27-snap.1243-T1 Valid prediction for snap_scaffold_27-snap.1282-T1 Valid prediction for GeneMark_model.102114_t Valid prediction for GlimmerHMM_glimmerT_58708-T1 Valid prediction for snap_scaffold_27-snap.1248-T1 Valid prediction for GlimmerHMM_glimmerT_58668-T1 Valid prediction for snap_scaffold_27-snap.1280-T1 Valid prediction for GeneMark_model.102083_t Valid prediction for GlimmerHMM_glimmerT_58679-T1 Valid prediction for snap_scaffold_27-snap.1285-T1 Valid prediction for GeneMark_model.102166_t Valid prediction for GlimmerHMM_glimmerT_58669-T1 Valid prediction for GeneMark_model.102097_t Valid prediction for GlimmerHMM_glimmerT_58693-T1 Valid prediction for snap_scaffold_27-snap.1239-T1 Valid prediction for GlimmerHMM_glimmerT_58699-T1 Valid prediction for snap_scaffold_27-snap.1253-T1 Valid prediction for snap_scaffold_27-snap.1299-T1 Valid prediction for GlimmerHMM_glimmerT_58692-T1 Valid prediction for GeneMark_model.102141_t Valid prediction for snap_scaffold_27-snap.1246-T1 Valid prediction for snap_scaffold_27-snap.1234-T1 Valid prediction for GeneMark_model.102145_t Valid prediction for GeneMark_model.102103_t Valid prediction for GlimmerHMM_glimmerT_58709-T1 Valid prediction for GlimmerHMM_glimmerT_58671-T1 Valid prediction for GlimmerHMM_glimmerT_58672-T1 Valid prediction for GeneMark_model.102125_t Valid prediction for GeneMark_model.102158_t Valid prediction for GeneMark_model.102122_t Valid prediction for GeneMark_model.102107_t Valid prediction for GlimmerHMM_glimmerT_58700-T1 Valid prediction for GlimmerHMM_glimmerT_58705-T1 Valid prediction for GeneMark_model.102139_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 94231, rend_intergenic: 94228 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 14320, rend_intergenic: 2109 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 19707, rend_intergenic: 15335 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 21084, rend_intergenic: 19746 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 24667, rend_intergenic: 21666 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38587, rend_intergenic: 33731 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42743, rend_intergenic: 39529 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50874, rend_intergenic: 49611 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61841, rend_intergenic: 51826 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64863, rend_intergenic: 64320 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 68830, rend_intergenic: 64955 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77650, rend_intergenic: 70750 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 80640, rend_intergenic: 77867 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 94077, rend_intergenic: 90280 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 105827, rend_intergenic: 94865 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110557, rend_intergenic: 107128 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 124921, rend_intergenic: 110775 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125834, rend_intergenic: 125501 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129352, rend_intergenic: 125937 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132613, rend_intergenic: 131768 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 137304, rend_intergenic: 133001 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145400, rend_intergenic: 141381 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 164340, rend_intergenic: 155126 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 167318, rend_intergenic: 165369 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 179032, rend_intergenic: 175743 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 181426, rend_intergenic: 180345 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 185181, rend_intergenic: 182612 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 194782, rend_intergenic: 186246 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195587, rend_intergenic: 194875 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 197695, rend_intergenic: 196372 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 215141, rend_intergenic: 204710 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222377, rend_intergenic: 219872 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 228761, rend_intergenic: 224621 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 230780 -exon list size: 1335 building trellis 0.1 0.1 0.2 0.3 0.4 0.4 0.5 0.6 0.7 0.7 0.8 0.9 1.0 1.0 1.1 1.2 1.3 1.3 1.4 1.5 1.6 1.6 1.7 1.8 1.9 1.9 2.0 2.1 2.2 2.2 2.3 2.4 2.5 2.5 2.6 2.7 2.8 2.8 2.9 3.0 3.1 3.1 3.2 3.3 3.4 3.4 3.5 3.6 3.7 3.7 3.8 3.9 4.0 4.0 4.1 4.2 4.3 4.3 4.4 4.5 4.6 4.6 4.7 4.8 4.9 4.9 5.0 5.1 5.2 5.2 5.3 5.4 5.5 5.5 5.6 5.7 5.8 5.8 5.9 6.0 6.1 6.1 6.2 6.3 6.4 6.4 6.5 6.6 6.7 6.7 6.8 6.9 7.0 7.0 7.1 7.2 7.3 7.3 7.4 7.5 7.6 7.6 7.7 7.8 7.9 7.9 8.0 8.1 8.2 8.2 8.3 8.4 8.5 8.5 8.6 8.7 8.8 8.8 8.9 9.0 9.1 9.1 9.2 9.3 9.3 9.4 9.5 9.6 9.6 9.7 9.8 9.9 9.9 10.0 10.1 10.2 10.2 10.3 10.4 10.5 10.5 10.6 10.7 10.8 10.8 10.9 11.0 11.1 11.1 11.2 11.3 11.4 11.4 11.5 11.6 11.7 11.7 11.8 11.9 12.0 12.0 12.1 12.2 12.3 12.3 12.4 12.5 12.6 12.6 12.7 12.8 12.9 12.9 13.0 13.1 13.2 13.2 13.3 13.4 13.5 13.5 13.6 13.7 13.8 13.8 13.9 14.0 14.1 14.1 14.2 14.3 14.4 14.4 14.5 14.6 14.7 14.7 14.8 14.9 15.0 15.0 15.1 15.2 15.3 15.3 15.4 15.5 15.6 15.6 15.7 15.8 15.9 15.9 16.0 16.1 16.2 16.2 16.3 16.4 16.5 16.5 16.6 16.7 16.8 16.8 16.9 17.0 17.1 17.1 17.2 17.3 17.4 17.4 17.5 17.6 17.7 17.7 17.8 17.9 18.0 18.0 18.1 18.2 18.2 18.3 18.4 18.5 18.5 18.6 18.7 18.8 18.8 18.9 19.0 19.1 19.1 19.2 19.3 19.4 19.4 19.5 19.6 19.7 19.7 19.8 19.9 20.0 20.0 20.1 20.2 20.3 20.3 20.4 20.5 20.6 20.6 20.7 20.8 20.9 20.9 21.0 21.1 21.2 21.2 21.3 21.4 21.5 21.5 21.6 21.7 21.8 21.8 21.9 22.0 22.1 22.1 22.2 22.3 22.4 22.4 22.5 22.6 22.7 22.7 22.8 22.9 23.0 23.0 23.1 23.2 23.3 23.3 23.4 23.5 23.6 23.6 23.7 23.8 23.9 23.9 24.0 24.1 24.2 24.2 24.3 24.4 24.5 24.5 24.6 24.7 24.8 24.8 24.9 25.0 25.1 25.1 25.2 25.3 25.4 25.4 25.5 25.6 25.7 25.7 25.8 25.9 26.0 26.0 26.1 26.2 26.3 26.3 26.4 26.5 26.6 26.6 26.7 26.8 26.9 26.9 27.0 27.1 27.2 27.2 27.3 27.4 27.4 27.5 27.6 27.7 27.7 27.8 27.9 28.0 28.0 28.1 28.2 28.3 28.3 28.4 28.5 28.6 28.6 28.7 28.8 28.9 28.9 29.0 29.1 29.2 29.2 29.3 29.4 29.5 29.5 29.6 29.7 29.8 29.8 29.9 30.0 30.1 30.1 30.2 30.3 30.4 30.4 30.5 30.6 30.7 30.7 30.8 30.9 31.0 31.0 31.1 31.2 31.3 31.3 31.4 31.5 31.6 31.6 31.7 31.8 31.9 31.9 32.0 32.1 32.2 32.2 32.3 32.4 32.5 32.5 32.6 32.7 32.8 32.8 32.9 33.0 33.1 33.1 33.2 33.3 33.4 33.4 33.5 33.6 33.7 33.7 33.8 33.9 34.0 34.0 34.1 34.2 34.3 34.3 34.4 34.5 34.6 34.6 34.7 34.8 34.9 34.9 35.0 35.1 35.2 35.2 35.3 35.4 35.5 35.5 35.6 35.7 35.8 35.8 35.9 36.0 36.1 36.1 36.2 36.3 36.4 36.4 36.5 36.6 36.6 36.7 36.8 36.9 36.9 37.0 37.1 37.2 37.2 37.3 37.4 37.5 37.5 37.6 37.7 37.8 37.8 37.9 38.0 38.1 38.1 38.2 38.3 38.4 38.4 38.5 38.6 38.7 38.7 38.8 38.9 39.0 39.0 39.1 39.2 39.3 39.3 39.4 39.5 39.6 39.6 39.7 39.8 39.9 39.9 40.0 40.1 40.2 40.2 40.3 40.4 40.5 40.5 40.6 40.7 40.8 40.8 40.9 41.0 41.1 41.1 41.2 41.3 41.4 41.4 41.5 41.6 41.7 41.7 41.8 41.9 42.0 42.0 42.1 42.2 42.3 42.3 42.4 42.5 42.6 42.6 42.7 42.8 42.9 42.9 43.0 43.1 43.2 43.2 43.3 43.4 43.5 43.5 43.6 43.7 43.8 43.8 43.9 44.0 44.1 44.1 44.2 44.3 44.4 44.4 44.5 44.6 44.7 44.7 44.8 44.9 45.0 45.0 45.1 45.2 45.3 45.3 45.4 45.5 45.5 45.6 45.7 45.8 45.8 45.9 46.0 46.1 46.1 46.2 46.3 46.4 46.4 46.5 46.6 46.7 46.7 46.8 46.9 47.0 47.0 47.1 47.2 47.3 47.3 47.4 47.5 47.6 47.6 47.7 47.8 47.9 47.9 48.0 48.1 48.2 48.2 48.3 48.4 48.5 48.5 48.6 48.7 48.8 48.8 48.9 49.0 49.1 49.1 49.2 49.3 49.4 49.4 49.5 49.6 49.7 49.7 49.8 49.9 50.0 50.0 50.1 50.2 50.3 50.3 50.4 50.5 50.6 50.6 50.7 50.8 50.9 50.9 51.0 51.1 51.2 51.2 51.3 51.4 51.5 51.5 51.6 51.7 51.8 51.8 51.9 52.0 52.1 52.1 52.2 52.3 52.4 52.4 52.5 52.6 52.7 52.7 52.8 52.9 53.0 53.0 53.1 53.2 53.3 53.3 53.4 53.5 53.6 53.6 53.7 53.8 53.9 53.9 54.0 54.1 54.2 54.2 54.3 54.4 54.5 54.5 54.6 54.7 54.7 54.8 54.9 55.0 55.0 55.1 55.2 55.3 55.3 55.4 55.5 55.6 55.6 55.7 55.8 55.9 55.9 56.0 56.1 56.2 56.2 56.3 56.4 56.5 56.5 56.6 56.7 56.8 56.8 56.9 57.0 57.1 57.1 57.2 57.3 57.4 57.4 57.5 57.6 57.7 57.7 57.8 57.9 58.0 58.0 58.1 58.2 58.3 58.3 58.4 58.5 58.6 58.6 58.7 58.8 58.9 58.9 59.0 59.1 59.2 59.2 59.3 59.4 59.5 59.5 59.6 59.7 59.8 59.8 59.9 60.0 60.1 60.1 60.2 60.3 60.4 60.4 60.5 60.6 60.7 60.7 60.8 60.9 61.0 61.0 61.1 61.2 61.3 61.3 61.4 61.5 61.6 61.6 61.7 61.8 61.9 61.9 62.0 62.1 62.2 62.2 62.3 62.4 62.5 62.5 62.6 62.7 62.8 62.8 62.9 63.0 63.1 63.1 63.2 63.3 63.4 63.4 63.5 63.6 63.6 63.7 63.8 63.9 63.9 64.0 64.1 64.2 64.2 64.3 64.4 64.5 64.5 64.6 64.7 64.8 64.8 64.9 65.0 65.1 65.1 65.2 65.3 65.4 65.4 65.5 65.6 65.7 65.7 65.8 65.9 66.0 66.0 66.1 66.2 66.3 66.3 66.4 66.5 66.6 66.6 66.7 66.8 66.9 66.9 67.0 67.1 67.2 67.2 67.3 67.4 67.5 67.5 67.6 67.7 67.8 67.8 67.9 68.0 68.1 68.1 68.2 68.3 68.4 68.4 68.5 68.6 68.7 68.7 68.8 68.9 69.0 69.0 69.1 69.2 69.3 69.3 69.4 69.5 69.6 69.6 69.7 69.8 69.9 69.9 70.0 70.1 70.2 70.2 70.3 70.4 70.5 70.5 70.6 70.7 70.8 70.8 70.9 71.0 71.1 71.1 71.2 71.3 71.4 71.4 71.5 71.6 71.7 71.7 71.8 71.9 72.0 72.0 72.1 72.2 72.3 72.3 72.4 72.5 72.6 72.6 72.7 72.8 72.8 72.9 73.0 73.1 73.1 73.2 73.3 73.4 73.4 73.5 73.6 73.7 73.7 73.8 73.9 74.0 74.0 74.1 74.2 74.3 74.3 74.4 74.5 74.6 74.6 74.7 74.8 74.9 74.9 75.0 75.1 75.2 75.2 75.3 75.4 75.5 75.5 75.6 75.7 75.8 75.8 75.9 76.0 76.1 76.1 76.2 76.3 76.4 76.4 76.5 76.6 76.7 76.7 76.8 76.9 77.0 77.0 77.1 77.2 77.3 77.3 77.4 77.5 77.6 77.6 77.7 77.8 77.9 77.9 78.0 78.1 78.2 78.2 78.3 78.4 78.5 78.5 78.6 78.7 78.8 78.8 78.9 79.0 79.1 79.1 79.2 79.3 79.4 79.4 79.5 79.6 79.7 79.7 79.8 79.9 80.0 80.0 80.1 80.2 80.3 80.3 80.4 80.5 80.6 80.6 80.7 80.8 80.9 80.9 81.0 81.1 81.2 81.2 81.3 81.4 81.5 81.5 81.6 81.7 81.8 81.8 81.9 82.0 82.0 82.1 82.2 82.3 82.3 82.4 82.5 82.6 82.6 82.7 82.8 82.9 82.9 83.0 83.1 83.2 83.2 83.3 83.4 83.5 83.5 83.6 83.7 83.8 83.8 83.9 84.0 84.1 84.1 84.2 84.3 84.4 84.4 84.5 84.6 84.7 84.7 84.8 84.9 85.0 85.0 85.1 85.2 85.3 85.3 85.4 85.5 85.6 85.6 85.7 85.8 85.9 85.9 86.0 86.1 86.2 86.2 86.3 86.4 86.5 86.5 86.6 86.7 86.8 86.8 86.9 87.0 87.1 87.1 87.2 87.3 87.4 87.4 87.5 87.6 87.7 87.7 87.8 87.9 88.0 88.0 88.1 88.2 88.3 88.3 88.4 88.5 88.6 88.6 88.7 88.8 88.9 88.9 89.0 89.1 89.2 89.2 89.3 89.4 89.5 89.5 89.6 89.7 89.8 89.8 89.9 90.0 90.1 90.1 90.2 90.3 90.4 90.4 90.5 90.6 90.7 90.7 90.8 90.9 90.9 91.0 91.1 91.2 91.2 91.3 91.4 91.5 91.5 91.6 91.7 91.8 91.8 91.9 92.0 92.1 92.1 92.2 92.3 92.4 92.4 92.5 92.6 92.7 92.7 92.8 92.9 93.0 93.0 93.1 93.2 93.3 93.3 93.4 93.5 93.6 93.6 93.7 93.8 93.9 93.9 94.0 94.1 94.2 94.2 94.3 94.4 94.5 94.5 94.6 94.7 94.8 94.8 94.9 95.0 95.1 95.1 95.2 95.3 95.4 95.4 95.5 95.6 95.7 95.7 95.8 95.9 96.0 96.0 96.1 96.2 96.3 96.3 96.4 96.5 96.6 96.6 96.7 96.8 96.9 96.9 97.0 97.1 97.2 97.2 97.3 97.4 97.5 97.5 97.6 97.7 97.8 97.8 97.9 98.0 98.1 98.1 98.2 98.3 98.4 98.4 98.5 98.6 98.7 98.7 98.8 98.9 99.0 99.0 99.1 99.2 99.3 99.3 99.4 99.5 99.6 99.6 99.7 99.8 99.9 99.9 -found 72 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 94231, rend_intergenic: 94228 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 14320, rend_intergenic: 2109 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 19707, rend_intergenic: 15335 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 21084, rend_intergenic: 19746 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 24667, rend_intergenic: 21666 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38587, rend_intergenic: 33731 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42743, rend_intergenic: 39529 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50874, rend_intergenic: 49611 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61841, rend_intergenic: 51826 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64863, rend_intergenic: 64320 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 68830, rend_intergenic: 64955 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77650, rend_intergenic: 70750 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 80640, rend_intergenic: 77867 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 94077, rend_intergenic: 90280 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 105827, rend_intergenic: 94865 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110557, rend_intergenic: 107128 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 124921, rend_intergenic: 110775 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125834, rend_intergenic: 125501 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129352, rend_intergenic: 125937 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132613, rend_intergenic: 131768 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 137304, rend_intergenic: 133001 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145400, rend_intergenic: 141381 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 164340, rend_intergenic: 155126 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 167318, rend_intergenic: 165369 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 179032, rend_intergenic: 175743 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 181426, rend_intergenic: 180345 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 185181, rend_intergenic: 182612 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 194782, rend_intergenic: 186246 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195587, rend_intergenic: 194875 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 197695, rend_intergenic: 196372 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 215141, rend_intergenic: 204710 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222377, rend_intergenic: 219872 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 228761, rend_intergenic: 224621 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 23 predictions persist after filtering for low support