-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_27/scaffold_27_4879517-5080783

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_41797-T1
Valid prediction for GeneMark_model.102000_t
Valid prediction for GlimmerHMM_glimmerT_58639-T1
Valid prediction for Augustus_model.g39079.t1
Valid prediction for snap_scaffold_27-snap.1202-T1
Couldn't classify 80993, 81301
Sorry, prediction pasa_asmbl_36290.p1 fails validation.
(ATG)	 AA	78164-78169	GT	AGG
(GAA)	 AG	78495-78642	GT	GAG
(TCG)	 AG	79485-79537	GT	GGG
(GTG)	 AG	79808-79905	GT	AGG
(GCT)	 AG	80430-80616	GT	CTG
(GAG)	 AG	80993-81301	GC	AGG
-recovered pasa_asmbl_36290.p1, initial, 78164, 78169
-recovered pasa_asmbl_36290.p1, internal, 78495, 78642
-recovered pasa_asmbl_36290.p1, internal, 79485, 79537
-recovered pasa_asmbl_36290.p1, internal, 79808, 79905
-recovered pasa_asmbl_36290.p1, internal, 80430, 80616
-recovered pasa_asmbl_36290.p1, internal, 80993, 81301
Valid prediction for snap_scaffold_27-snap.1200-T1
Valid prediction for GeneMark_model.102003_t
Valid prediction for snap_scaffold_27-snap.1198-T1
Valid prediction for snap_scaffold_27-snap.1166-T1
Valid prediction for GeneMark_model.101985_t
Valid prediction for GeneMark_model.102030_t
Valid prediction for GeneMark_model.102033_t
Valid prediction for snap_scaffold_27-snap.1188-T1
Valid prediction for snap_scaffold_27-snap.1177-T1
Valid prediction for CodingQuarry_transcript_41799-T1
Valid prediction for GeneMark_model.101973_t
Valid prediction for GeneMark_model.102007_t
Valid prediction for GlimmerHMM_glimmerT_58637-T1
Valid prediction for snap_scaffold_27-snap.1180-T1
Valid prediction for GeneMark_model.102011_t
Valid prediction for snap_scaffold_27-snap.1193-T1
Valid prediction for snap_scaffold_27-snap.1158-T1
Valid prediction for GeneMark_model.101975_t
Valid prediction for snap_scaffold_27-snap.1184-T1
Valid prediction for CodingQuarry_transcript_41801-T1
Valid prediction for snap_scaffold_27-snap.1173-T1
Valid prediction for CodingQuarry_transcript_41798-T1
Valid prediction for GlimmerHMM_glimmerT_58649-T1
Couldn't classify 144701, 145156
Sorry, prediction pasa_asmbl_36296.p1 fails validation.
(GGC)	 CA	144701-145156	GT	AGG
(GCC)	 AG	145586-145673	GT	AGG
(AGA)	 AG	145826-145878	AC	AGA
-recovered pasa_asmbl_36296.p1, terminal, 145826, 145878
-recovered pasa_asmbl_36296.p1, internal, 145586, 145673
Valid prediction for GlimmerHMM_glimmerT_58627-T1
Valid prediction for GeneMark_model.102032_t
Valid prediction for GeneMark_model.101970_t
Valid prediction for GeneMark_model.101980_t
Valid prediction for GlimmerHMM_glimmerT_58636-T1
Valid prediction for Augustus_model.g39081.t1
Couldn't classify 81395, 82368
Sorry, prediction pasa_asmbl_36291.p1 fails validation.
(GAT)	 TG	81395-82368	GT	GAG
(GAG)	 AG	82400-82472	CA	GAC
-recovered pasa_asmbl_36291.p1, terminal, 82400, 82472
Valid prediction for GeneMark_model.102026_t
Valid prediction for GeneMark_model.101987_t
Valid prediction for GeneMark_model.102036_t
Valid prediction for GeneMark_model.101978_t
Valid prediction for snap_scaffold_27-snap.1182-T1
Valid prediction for GeneMark_model.101968_t
Valid prediction for GeneMark_model.102016_t
Valid prediction for GeneMark_model.101964_t
Valid prediction for GeneMark_model.101994_t
Valid prediction for GeneMark_model.101982_t
Valid prediction for GlimmerHMM_glimmerT_58647-T1
Couldn't classify 130106, 130142
Couldn't classify 134395, 134532
Sorry, prediction pasa_asmbl_36553.p1 fails validation.
(GGA)	 AG	130106-130142	GT	AGG
(ATG)	 AG	131250-131362	GT	GGG
(GTA)	 AG	132170-132244	GT	AGG
(GGA)	 AG	134395-134532	GA	GGG
add_exon() Sorry, pasa_asmbl_36553.p1 131250-131362-initial-1 is invalid.
-recovered pasa_asmbl_36553.p1, initial, 131250, 131362
-recovered pasa_asmbl_36553.p1, internal, 130106, 130142
-recovered pasa_asmbl_36553.p1, internal, 131250, 131362
-recovered pasa_asmbl_36553.p1, internal, 132170, 132244
Valid prediction for Augustus_model.g39077.t1
Valid prediction for snap_scaffold_27-snap.1204-T1
Valid prediction for GeneMark_model.102037_t
Valid prediction for snap_scaffold_27-snap.1161-T1
Valid prediction for snap_scaffold_27-snap.1179-T1
Valid prediction for snap_scaffold_27-snap.1164-T1
Valid prediction for snap_scaffold_27-snap.1191-T1
Couldn't classify 138199, 138318
Sorry, prediction pasa_asmbl_36294.p2 fails validation.
(ATG)	 AG	135803-135844	GT	AGG
(CGC)	 AG	136012-136163	GT	AGG
(GAA)	 AG	136335-136392	GT	TAG
(GCG)	 AG	137526-137582	GT	AGG
(GAA)	 AG	138199-138318	GG	CTG
-recovered pasa_asmbl_36294.p2, initial, 135803, 135844
-recovered pasa_asmbl_36294.p2, internal, 135803, 135844
-recovered pasa_asmbl_36294.p2, internal, 136012, 136163
-recovered pasa_asmbl_36294.p2, internal, 136335, 136392
-recovered pasa_asmbl_36294.p2, internal, 137526, 137582
Valid prediction for GeneMark_model.101962_t
Valid prediction for GlimmerHMM_glimmerT_58643-T1
Valid prediction for GeneMark_model.101989_t
Valid prediction for snap_scaffold_27-snap.1174-T1
Valid prediction for GeneMark_model.101960_t
Valid prediction for GlimmerHMM_glimmerT_58641-T1
Valid prediction for GlimmerHMM_glimmerT_58626-T1
Valid prediction for snap_scaffold_27-snap.1157-T1
Valid prediction for GeneMark_model.102028_t
Valid prediction for GeneMark_model.101991_t
Valid prediction for snap_scaffold_27-snap.1196-T1
Valid prediction for snap_scaffold_27-snap.1194-T1
Valid prediction for GeneMark_model.102019_t
Valid prediction for GeneMark_model.102014_t
Valid prediction for HiQ_model.g39076.t1
Valid prediction for GeneMark_model.102022_t
Valid prediction for snap_scaffold_27-snap.1186-T1
Valid prediction for GeneMark_model.101966_t
Valid prediction for Augustus_model.g39074.t1
Valid prediction for GeneMark_model.102009_t
Valid prediction for snap_scaffold_27-snap.1155-T1
Couldn't classify 8999, 9112
Couldn't classify 15555, 15587
Sorry, prediction pasa_asmbl_36279.p1 fails validation.
(GCG)	 CC	8999-9112	GT	AGG
(CTG)	 AG	9425-9548	GT	AGG
(AGA)	 AG	10460-10650	GT	AGG
(ACA)	 AG	10850-10988	GT	GGG
(AGG)	 AG	11094-11287	GT	AGG
(TAC)	 AG	11404-11549	GT	AAG
(TCT)	 AG	11814-11935	GT	AGG
(ACG)	 AG	12039-12149	GT	CGG
(GCC)	 AG	13162-13352	GT	GAG
(TGC)	 AG	15002-15124	GT	ACG
(GGC)	 AG	15555-15587	GC	AAG
add_exon() Sorry, pasa_asmbl_36279.p1 9425-9548-terminal-3 is invalid.
-recovered pasa_asmbl_36279.p1, terminal, 9425, 9548
-recovered pasa_asmbl_36279.p1, internal, 9425, 9548
-recovered pasa_asmbl_36279.p1, internal, 10460, 10650
-recovered pasa_asmbl_36279.p1, internal, 10850, 10988
-recovered pasa_asmbl_36279.p1, internal, 11094, 11287
-recovered pasa_asmbl_36279.p1, internal, 11404, 11549
-recovered pasa_asmbl_36279.p1, internal, 11814, 11935
-recovered pasa_asmbl_36279.p1, internal, 12039, 12149
-recovered pasa_asmbl_36279.p1, internal, 13162, 13352
-recovered pasa_asmbl_36279.p1, internal, 15002, 15124
-recovered pasa_asmbl_36279.p1, internal, 15555, 15587
Valid prediction for GeneMark_model.101993_t
Valid prediction for pasa_asmbl_36289.p1
Valid prediction for GeneMark_model.101984_t
Valid prediction for CodingQuarry_transcript_41800-T1
Valid prediction for Augustus_model.g39072.t1
Valid prediction for snap_scaffold_27-snap.1169-T1
Valid prediction for snap_scaffold_27-snap.1171-T1
Valid prediction for GlimmerHMM_glimmerT_58644-T1
Valid prediction for GlimmerHMM_glimmerT_58635-T1
Valid prediction for GeneMark_model.101998_t
Valid prediction for pasa_asmbl_36282.p1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.102021_t
Couldn't classify 19395, 19484
Sorry, prediction pasa_asmbl_36939.p1 fails validation.
(TGC)	 TC	19395-19484	GT	AGG
(GTG)	 AG	20240-20380	GT	TAG
(GTG)	 AG	20965-21155	GT	CGG
(GGA)	 AG	22694-22731	GT	CGG
(GCC)	 AG	24422-24511	GT	GGG
(CTC)	 AG	24824-25032	GT	TGG
(CTG)	 AG	25253-25390	GT	ATG
(CCT)	 AG	25968-26105	GT	AGG
(ATG)	 AG	26477-26611	GT	AGG
(GAC)	 AG	27054-27104	CG	GAC
-recovered pasa_asmbl_36939.p1, initial, 26477, 26611
-recovered pasa_asmbl_36939.p1, terminal, 27054, 27104
-recovered pasa_asmbl_36939.p1, internal, 20240, 20380
-recovered pasa_asmbl_36939.p1, internal, 20965, 21155
-recovered pasa_asmbl_36939.p1, internal, 22694, 22731
-recovered pasa_asmbl_36939.p1, internal, 24422, 24511
-recovered pasa_asmbl_36939.p1, internal, 24824, 25032
-recovered pasa_asmbl_36939.p1, internal, 25253, 25390
-recovered pasa_asmbl_36939.p1, internal, 25968, 26105
-recovered pasa_asmbl_36939.p1, internal, 26477, 26611
Valid prediction for GeneMark_model.101967_t
Valid prediction for Augustus_model.g39082.t1
Valid prediction for snap_scaffold_27-snap.1168-T1
Valid prediction for snap_scaffold_27-snap.1159-T1
Valid prediction for GlimmerHMM_glimmerT_58632-T1
Valid prediction for GeneMark_model.102034_t
Valid prediction for GeneMark_model.101996_t
Valid prediction for snap_scaffold_27-snap.1156-T1
Valid prediction for GeneMark_model.102017_t
Valid prediction for GeneMark_model.102038_t
Valid prediction for snap_scaffold_27-snap.1190-T1
Valid prediction for GeneMark_model.101997_t
Valid prediction for Augustus_model.g39084.t1
Valid prediction for snap_scaffold_27-snap.1167-T1
Valid prediction for GeneMark_model.102029_t
Valid prediction for snap_scaffold_27-snap.1162-T1
Valid prediction for GlimmerHMM_glimmerT_58634-T1
Valid prediction for Augustus_model.g39080.t1
Valid prediction for snap_scaffold_27-snap.1170-T1
Valid prediction for snap_scaffold_27-snap.1165-T1
Valid prediction for GeneMark_model.102024_t
Valid prediction for GeneMark_model.101983_t
Valid prediction for Augustus_model.g39073.t1
Valid prediction for GeneMark_model.102035_t
Valid prediction for snap_scaffold_27-snap.1197-T1
Valid prediction for GeneMark_model.102025_t
Valid prediction for GeneMark_model.101999_t
Valid prediction for GeneMark_model.101963_t
Valid prediction for Augustus_model.g39075.t1
Valid prediction for GeneMark_model.101969_t
Valid prediction for snap_scaffold_27-snap.1175-T1
Valid prediction for snap_scaffold_27-snap.1178-T1
Valid prediction for snap_scaffold_27-snap.1189-T1
Valid prediction for GeneMark_model.101977_t
Valid prediction for GeneMark_model.101972_t
Valid prediction for snap_scaffold_27-snap.1203-T1
Valid prediction for GlimmerHMM_glimmerT_58645-T1
Valid prediction for GeneMark_model.101981_t
Valid prediction for GeneMark_model.101965_t
Valid prediction for GeneMark_model.102023_t
Valid prediction for snap_scaffold_27-snap.1192-T1
Valid prediction for GlimmerHMM_glimmerT_58648-T1
Valid prediction for GeneMark_model.101971_t
Valid prediction for GeneMark_model.101995_t
Valid prediction for snap_scaffold_27-snap.1183-T1
Valid prediction for GeneMark_model.102031_t
Valid prediction for GlimmerHMM_glimmerT_58650-T1
Valid prediction for snap_scaffold_27-snap.1201-T1
Valid prediction for GeneMark_model.101979_t
Valid prediction for GeneMark_model.102013_t
Couldn't classify 80540, 80624
Sorry, prediction GeneMark_model.102006_t fails validation.
(ATG)	 GC	79924-79934	GT	GGG
(ATG)	 AG	80142-80189	GT	GAG
(CTA)	 AG	80225-80290	GT	GAG
(TTC)	 AG	80540-80624	GT	TGG
-recovered GeneMark_model.102006_t, initial, 79924, 79934
add_exon() Sorry, GeneMark_model.102006_t 80142-80189-initial-1 is invalid.
-recovered GeneMark_model.102006_t, initial, 80142, 80189
-recovered GeneMark_model.102006_t, internal, 80142, 80189
-recovered GeneMark_model.102006_t, internal, 80225, 80290
-recovered GeneMark_model.102006_t, internal, 80540, 80624
Valid prediction for GlimmerHMM_glimmerT_58631-T1
Valid prediction for GlimmerHMM_glimmerT_58642-T1
Valid prediction for GeneMark_model.101986_t
Valid prediction for GeneMark_model.102027_t
Couldn't classify 14721, 14837
Couldn't classify 19421, 19475
Sorry, prediction pasa_asmbl_36941.p1 fails validation.
(ACA)	 CC	14721-14837	GT	TGG
(GCG)	 AG	16012-16089	GT	AGG
(TCT)	 AG	16282-16379	GT	AAG
(GTT)	 AG	17777-17869	GT	AGG
(ACA)	 AG	19421-19475	TT	GTT
-recovered pasa_asmbl_36941.p1, internal, 16012, 16089
-recovered pasa_asmbl_36941.p1, internal, 16282, 16379
-recovered pasa_asmbl_36941.p1, internal, 17777, 17869
Valid prediction for snap_scaffold_27-snap.1176-T1
Valid prediction for GeneMark_model.102012_t
Valid prediction for GlimmerHMM_glimmerT_58646-T1
Couldn't classify 143043, 143079
Couldn't classify 145637, 145776
Sorry, prediction pasa_asmbl_36934.p1 fails validation.
(GGA)	 AT	143043-143079	GT	GGG
(TCA)	 AG	143607-143710	GT	AGG
(AGC)	 AG	144896-144991	GT	GCG
(GCC)	 AG	145233-145380	GT	AGG
(CAG)	 AG	145637-145776	AT	CCA
-recovered pasa_asmbl_36934.p1, internal, 143607, 143710
-recovered pasa_asmbl_36934.p1, internal, 144896, 144991
-recovered pasa_asmbl_36934.p1, internal, 145233, 145380
Valid prediction for snap_scaffold_27-snap.1172-T1
Valid prediction for GeneMark_model.101976_t
Valid prediction for GeneMark_model.102015_t
Valid prediction for GlimmerHMM_glimmerT_58638-T1
Valid prediction for GeneMark_model.101959_t
Valid prediction for snap_scaffold_27-snap.1163-T1
Valid prediction for GlimmerHMM_glimmerT_58628-T1
Valid prediction for GeneMark_model.101974_t
Valid prediction for GlimmerHMM_glimmerT_58630-T1
Valid prediction for snap_scaffold_27-snap.1181-T1
Valid prediction for Augustus_model.g39085.t1
Valid prediction for Augustus_model.g39083.t1
Valid prediction for GlimmerHMM_glimmerT_58629-T1
Valid prediction for GeneMark_model.101992_t
Valid prediction for GeneMark_model.101961_t
Valid prediction for GeneMark_model.102018_t
Valid prediction for snap_scaffold_27-snap.1199-T1
Valid prediction for GlimmerHMM_glimmerT_58640-T1
Couldn't classify 80815, 80838
Sorry, prediction GeneMark_model.102005_t fails validation.
(GGT)	 AG	80815-80838	GT	GAG
(GGG)	 AG	81226-81237	GT	AAG
(AGA)	 AG	81428-81505	GT	GGG
(GGG)	 AG	81530-81544	GT	AGG
(GAC)	 AG	81577-81584	GT	AGG
(GGA)	 AG	81645-81682	CC	AGC
-recovered GeneMark_model.102005_t, terminal, 81645, 81682
-recovered GeneMark_model.102005_t, internal, 80815, 80838
-recovered GeneMark_model.102005_t, internal, 81226, 81237
-recovered GeneMark_model.102005_t, internal, 81428, 81505
-recovered GeneMark_model.102005_t, internal, 81530, 81544
-recovered GeneMark_model.102005_t, internal, 81577, 81584
Valid prediction for GeneMark_model.102004_t
Valid prediction for GeneMark_model.102001_t
Valid prediction for GlimmerHMM_glimmerT_58633-T1
Valid prediction for GeneMark_model.102010_t
Valid prediction for snap_scaffold_27-snap.1185-T1
Valid prediction for CodingQuarry_transcript_41802-T1
Valid prediction for GeneMark_model.101988_t
Valid prediction for GeneMark_model.102008_t
Valid prediction for snap_scaffold_27-snap.1187-T1
Valid prediction for Augustus_model.g39078.t1
Valid prediction for GeneMark_model.102020_t
Valid prediction for snap_scaffold_27-snap.1160-T1
Valid prediction for snap_scaffold_27-snap.1195-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10755, rend_intergenic: 3492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17164, rend_intergenic: 13104  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30936, rend_intergenic: 18362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36961, rend_intergenic: 31613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39966, rend_intergenic: 38690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42616, rend_intergenic: 40456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50573, rend_intergenic: 44074  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57240, rend_intergenic: 54510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66892, rend_intergenic: 61813  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77419, rend_intergenic: 73347  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83065, rend_intergenic: 79055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88198, rend_intergenic: 84758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103102, rend_intergenic: 90928  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110346, rend_intergenic: 103729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116214, rend_intergenic: 113301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117108, rend_intergenic: 116475  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128192, rend_intergenic: 118549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129254, rend_intergenic: 128200  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145878, rend_intergenic: 130051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156867, rend_intergenic: 149602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162039, rend_intergenic: 160583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169584, rend_intergenic: 163039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175588, rend_intergenic: 174164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177094, rend_intergenic: 175885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181111, rend_intergenic: 178155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191535, rend_intergenic: 182457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197851, rend_intergenic: 191918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 201267
-exon list size: 1030


building trellis

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23.9    
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29.9    
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30.8    
30.9    
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31.7    
31.8    
31.9    
32.0    
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32.2    
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32.8    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 48 predictions from path traversal
Error with prediction: snap lend_intergenic: 10755, rend_intergenic: 3492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17164, rend_intergenic: 13104  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30936, rend_intergenic: 18362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36961, rend_intergenic: 31613  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39966, rend_intergenic: 38690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42616, rend_intergenic: 40456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50573, rend_intergenic: 44074  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57240, rend_intergenic: 54510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66892, rend_intergenic: 61813  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77419, rend_intergenic: 73347  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83065, rend_intergenic: 79055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88198, rend_intergenic: 84758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103102, rend_intergenic: 90928  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110346, rend_intergenic: 103729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116214, rend_intergenic: 113301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117108, rend_intergenic: 116475  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128192, rend_intergenic: 118549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129254, rend_intergenic: 128200  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145878, rend_intergenic: 130051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156867, rend_intergenic: 149602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162039, rend_intergenic: 160583  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169584, rend_intergenic: 163039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175588, rend_intergenic: 174164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177094, rend_intergenic: 175885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181111, rend_intergenic: 178155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191535, rend_intergenic: 182457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197851, rend_intergenic: 191918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support