-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_27/scaffold_27_4423824-4695334

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.101828_t
Valid prediction for GeneMark_model.101867_t
Valid prediction for GlimmerHMM_glimmerT_58589-T1
Valid prediction for GeneMark_model.101860_t
Valid prediction for GeneMark_model.101827_t
Valid prediction for GeneMark_model.101843_t
Valid prediction for GeneMark_model.101835_t
Valid prediction for pasa_asmbl_36262.p1
Valid prediction for CodingQuarry_transcript_41790-T1
Valid prediction for GlimmerHMM_glimmerT_58598-T1
Valid prediction for GeneMark_model.101818_t
Valid prediction for snap_scaffold_27-snap.1110-T1
Valid prediction for GlimmerHMM_glimmerT_58600-T1
Valid prediction for GeneMark_model.101853_t
Valid prediction for GeneMark_model.101900_t
Valid prediction for GlimmerHMM_glimmerT_58590-T1
Valid prediction for snap_scaffold_27-snap.1095-T1
Valid prediction for GeneMark_model.101851_t
Valid prediction for GeneMark_model.101822_t
Valid prediction for GeneMark_model.101872_t
Valid prediction for GeneMark_model.101903_t
Valid prediction for GeneMark_model.101862_t
Valid prediction for GeneMark_model.101832_t
Valid prediction for GeneMark_model.101868_t
Valid prediction for Augustus_model.g39044.t1
Valid prediction for GeneMark_model.101823_t
Valid prediction for snap_scaffold_27-snap.1072-T1
Valid prediction for snap_scaffold_27-snap.1114-T1
Valid prediction for GeneMark_model.101837_t
Valid prediction for GeneMark_model.101874_t
Valid prediction for GeneMark_model.101844_t
Valid prediction for Augustus_model.g39047.t1
Valid prediction for GlimmerHMM_glimmerT_58586-T1
Valid prediction for snap_scaffold_27-snap.1092-T1
Valid prediction for GeneMark_model.101888_t
Couldn't classify 83833, 83878
Sorry, prediction pasa_asmbl_36255.p1 fails validation.
(CCT)	 CC	83833-83878	GT	AGG
(GTG)	 AG	84708-84772	GT	TGG
(GCG)	 AG	85007-85128	GT	AGG
(CTC)	 AG	85282-85347	GT	GGG
(GGG)	 AG	85524-85589	GT	TGG
(GTC)	 AG	85702-85900	GT	GAG
-recovered pasa_asmbl_36255.p1, terminal, 85702, 85900
-recovered pasa_asmbl_36255.p1, internal, 84708, 84772
-recovered pasa_asmbl_36255.p1, internal, 85007, 85128
-recovered pasa_asmbl_36255.p1, internal, 85282, 85347
-recovered pasa_asmbl_36255.p1, internal, 85524, 85589
-recovered pasa_asmbl_36255.p1, internal, 85702, 85900
Valid prediction for GeneMark_model.101880_t
Valid prediction for GlimmerHMM_glimmerT_58580-T1
Valid prediction for snap_scaffold_27-snap.1067-T1
Valid prediction for GlimmerHMM_glimmerT_58585-T1
Valid prediction for GeneMark_model.101885_t
Valid prediction for snap_scaffold_27-snap.1101-T1
Valid prediction for snap_scaffold_27-snap.1074-T1
Couldn't classify 91009, 91929
Sorry, prediction pasa_asmbl_36259.p1 fails validation.
(CCC)	 CC	91009-91929	CC	GAC
Valid prediction for HiQ_model.g39043.t1
Valid prediction for Augustus_model.g39055.t1
Valid prediction for GeneMark_model.101841_t
Valid prediction for snap_scaffold_27-snap.1094-T1
Valid prediction for GeneMark_model.101840_t
Valid prediction for Augustus_model.g39039.t1
Valid prediction for Augustus_model.g39053.t1
Valid prediction for snap_scaffold_27-snap.1068-T1
Valid prediction for GeneMark_model.101869_t
Valid prediction for GeneMark_model.101849_t
Valid prediction for GlimmerHMM_glimmerT_58584-T1
Valid prediction for snap_scaffold_27-snap.1112-T1
Valid prediction for GeneMark_model.101825_t
Valid prediction for GeneMark_model.101894_t
Valid prediction for snap_scaffold_27-snap.1090-T1
Valid prediction for GlimmerHMM_glimmerT_58571-T1
Valid prediction for snap_scaffold_27-snap.1076-T1
Valid prediction for GlimmerHMM_glimmerT_58583-T1
Valid prediction for snap_scaffold_27-snap.1086-T1
Couldn't classify 88862, 88985
Sorry, prediction pasa_asmbl_36257.p1 fails validation.
(ATG)	 TC	86557-86595	GT	AGG
(ATC)	 AG	86744-86872	GT	TGG
(GGC)	 AG	86974-87020	GT	GGG
(GGT)	 AG	87231-87377	GT	AAG
(GAA)	 AG	87606-87806	GT	AGG
(TAA)	 AG	88862-88985	GG	AGG
-recovered pasa_asmbl_36257.p1, initial, 86557, 86595
-recovered pasa_asmbl_36257.p1, internal, 86744, 86872
-recovered pasa_asmbl_36257.p1, internal, 86974, 87020
-recovered pasa_asmbl_36257.p1, internal, 87231, 87377
-recovered pasa_asmbl_36257.p1, internal, 87606, 87806
Valid prediction for snap_scaffold_27-snap.1107-T1
Valid prediction for GlimmerHMM_glimmerT_58576-T1
Valid prediction for snap_scaffold_27-snap.1099-T1
Valid prediction for snap_scaffold_27-snap.1104-T1
Valid prediction for snap_scaffold_27-snap.1081-T1
Valid prediction for snap_scaffold_27-snap.1089-T1
Valid prediction for snap_scaffold_27-snap.1103-T1
Valid prediction for GeneMark_model.101871_t
Valid prediction for GeneMark_model.101876_t
Couldn't classify 90346, 90369
Couldn't classify 90610, 90954
Sorry, prediction pasa_asmbl_36531.p1 fails validation.
(GAG)	 GT	90346-90369	GT	AGG
(GAG)	 AG	90610-90954	CC	CGC
Valid prediction for GeneMark_model.101857_t
Valid prediction for snap_scaffold_27-snap.1085-T1
Valid prediction for GeneMark_model.101878_t
Valid prediction for Augustus_model.g39042.t1
Valid prediction for snap_scaffold_27-snap.1079-T1
Valid prediction for GeneMark_model.101898_t
Valid prediction for GeneMark_model.101890_t
Valid prediction for GlimmerHMM_glimmerT_58602-T1
Valid prediction for CodingQuarry_transcript_41791-T1
Valid prediction for Augustus_model.g39046.t1
Valid prediction for GeneMark_model.101883_t
Valid prediction for snap_scaffold_27-snap.1109-T1
Valid prediction for GeneMark_model.101892_t
Valid prediction for GeneMark_model.101865_t
Valid prediction for GeneMark_model.101847_t
Valid prediction for snap_scaffold_27-snap.1059-T1
Valid prediction for snap_scaffold_27-snap.1102-T1
Valid prediction for GeneMark_model.101855_t
Valid prediction for snap_scaffold_27-snap.1063-T1
Valid prediction for GeneMark_model.101820_t
Valid prediction for GeneMark_model.101896_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_27-snap.1064-T1
Valid prediction for HiQ_model.g39036.t1
Valid prediction for GlimmerHMM_glimmerT_58599-T1
Valid prediction for GeneMark_model.101850_t
Valid prediction for Augustus_model.g39034.t1
Valid prediction for snap_scaffold_27-snap.1077-T1
Valid prediction for snap_scaffold_27-snap.1087-T1
Valid prediction for snap_scaffold_27-snap.1106-T1
Valid prediction for Augustus_model.g39035.t1
Valid prediction for snap_scaffold_27-snap.1075-T1
Valid prediction for GeneMark_model.101824_t
Valid prediction for snap_scaffold_27-snap.1111-T1
Valid prediction for Augustus_model.g39052.t1
Valid prediction for GeneMark_model.101881_t
Valid prediction for GeneMark_model.101836_t
Valid prediction for Augustus_model.g39051.t1
Valid prediction for GlimmerHMM_glimmerT_58593-T1
Valid prediction for GeneMark_model.101845_t
Valid prediction for GlimmerHMM_glimmerT_58587-T1
Valid prediction for snap_scaffold_27-snap.1080-T1
Valid prediction for Augustus_model.g39037.t1
Valid prediction for Augustus_model.g39040.t1
Valid prediction for GlimmerHMM_glimmerT_58572-T1
Valid prediction for GlimmerHMM_glimmerT_58575-T1
Valid prediction for GlimmerHMM_glimmerT_58591-T1
Valid prediction for GlimmerHMM_glimmerT_58573-T1
Valid prediction for GeneMark_model.101838_t
Valid prediction for GlimmerHMM_glimmerT_58577-T1
Valid prediction for snap_scaffold_27-snap.1061-T1
Valid prediction for GlimmerHMM_glimmerT_58582-T1
Valid prediction for snap_scaffold_27-snap.1105-T1
Valid prediction for snap_scaffold_27-snap.1113-T1
Valid prediction for snap_scaffold_27-snap.1083-T1
Valid prediction for snap_scaffold_27-snap.1096-T1
Valid prediction for GeneMark_model.101848_t
Valid prediction for GeneMark_model.101875_t
Valid prediction for snap_scaffold_27-snap.1073-T1
Valid prediction for CodingQuarry_transcript_41788-T1
Valid prediction for snap_scaffold_27-snap.1100-T1
Valid prediction for GlimmerHMM_glimmerT_58601-T1
Valid prediction for snap_scaffold_27-snap.1093-T1
Valid prediction for GeneMark_model.101858_t
Valid prediction for snap_scaffold_27-snap.1060-T1
Valid prediction for GeneMark_model.101834_t
Valid prediction for GeneMark_model.101829_t
Valid prediction for GeneMark_model.101887_t
Valid prediction for pasa_asmbl_36907.p1
Valid prediction for snap_scaffold_27-snap.1070-T1
Valid prediction for GeneMark_model.101830_t
Valid prediction for GeneMark_model.101833_t
Valid prediction for GeneMark_model.101856_t
Valid prediction for snap_scaffold_27-snap.1066-T1
Valid prediction for GeneMark_model.101852_t
Valid prediction for GlimmerHMM_glimmerT_58597-T1
Valid prediction for GlimmerHMM_glimmerT_58595-T1
Valid prediction for Augustus_model.g39050.t1
Valid prediction for GeneMark_model.101831_t
Valid prediction for GlimmerHMM_glimmerT_58579-T1
Valid prediction for GeneMark_model.101891_t
Valid prediction for GeneMark_model.101886_t
Valid prediction for GlimmerHMM_glimmerT_58581-T1
Valid prediction for GeneMark_model.101817_t
Valid prediction for GeneMark_model.101884_t
Valid prediction for GlimmerHMM_glimmerT_58578-T1
Valid prediction for GeneMark_model.101839_t
Valid prediction for HiQ_model.g39038.t1
Valid prediction for GeneMark_model.101846_t
Valid prediction for GeneMark_model.101901_t
Valid prediction for snap_scaffold_27-snap.1084-T1
Valid prediction for GeneMark_model.101866_t
Valid prediction for snap_scaffold_27-snap.1065-T1
Valid prediction for GeneMark_model.101842_t
Valid prediction for snap_scaffold_27-snap.1097-T1
Valid prediction for Augustus_model.g39045.t1
Valid prediction for Augustus_model.g39056.t1
Valid prediction for GlimmerHMM_glimmerT_58574-T1
Valid prediction for Augustus_model.g39049.t1
Valid prediction for GlimmerHMM_glimmerT_58592-T1
Valid prediction for snap_scaffold_27-snap.1088-T1
Valid prediction for snap_scaffold_27-snap.1069-T1
Valid prediction for GeneMark_model.101873_t
Valid prediction for snap_scaffold_27-snap.1082-T1
Valid prediction for CodingQuarry_transcript_41789-T1
Valid prediction for snap_scaffold_27-snap.1078-T1
Valid prediction for GeneMark_model.101821_t
Valid prediction for GeneMark_model.101895_t
Valid prediction for snap_scaffold_27-snap.1062-T1
Valid prediction for snap_scaffold_27-snap.1071-T1
Valid prediction for GeneMark_model.101819_t
Valid prediction for GeneMark_model.101879_t
Valid prediction for snap_scaffold_27-snap.1058-T1
Couldn't classify 179074, 179391
Sorry, prediction pasa_asmbl_36525.p1 fails validation.
(CAC)	 CA	179074-179391	TT	GAT
Valid prediction for GeneMark_model.101826_t
Valid prediction for GlimmerHMM_glimmerT_58588-T1
Valid prediction for HiQ_model.g39041.t1
Valid prediction for GeneMark_model.101889_t
Valid prediction for GeneMark_model.101902_t
Valid prediction for GeneMark_model.101882_t
Valid prediction for GlimmerHMM_glimmerT_58603-T1
Valid prediction for GeneMark_model.101854_t
Valid prediction for GeneMark_model.101893_t
Valid prediction for pasa_asmbl_36910.p1
Valid prediction for GeneMark_model.101870_t
Valid prediction for Augustus_model.g39048.t1
Valid prediction for GeneMark_model.101899_t
Valid prediction for pasa_asmbl_36913.p1
Valid prediction for GeneMark_model.101859_t
Valid prediction for GeneMark_model.101897_t
Valid prediction for GlimmerHMM_glimmerT_58596-T1
Valid prediction for GlimmerHMM_glimmerT_58594-T1
Valid prediction for snap_scaffold_27-snap.1098-T1
Valid prediction for GeneMark_model.101861_t
Valid prediction for snap_scaffold_27-snap.1091-T1
Valid prediction for snap_scaffold_27-snap.1108-T1
Valid prediction for GeneMark_model.101863_t
Valid prediction for GeneMark_model.101877_t
Valid prediction for Augustus_model.g39054.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8020, rend_intergenic: 6470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13120, rend_intergenic: 8659  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30086, rend_intergenic: 14404  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52912, rend_intergenic: 47600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65401, rend_intergenic: 55244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71227, rend_intergenic: 69141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80897, rend_intergenic: 75302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93339, rend_intergenic: 83602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97871, rend_intergenic: 96738  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103766, rend_intergenic: 98394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105814, rend_intergenic: 104547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124379, rend_intergenic: 116284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133746, rend_intergenic: 128184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142831, rend_intergenic: 133912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145284, rend_intergenic: 142831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145585, rend_intergenic: 145362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147613, rend_intergenic: 145725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153151, rend_intergenic: 148083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160410, rend_intergenic: 154281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188248, rend_intergenic: 174914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198590, rend_intergenic: 189012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217625, rend_intergenic: 198592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231538, rend_intergenic: 221944  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237586, rend_intergenic: 232377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 240561, rend_intergenic: 237618  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 249117, rend_intergenic: 241087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 265834, rend_intergenic: 250525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 271511
-exon list size: 1288


building trellis

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29.1    
29.2    
29.3    
29.4    
29.5    
29.5    
29.6    
29.7    
29.8    
29.8    
29.9    
30.0    
30.1    
30.2    
30.2    
30.3    
30.4    
30.5    
30.5    
30.6    
30.7    
30.8    
30.9    
30.9    
31.0    
31.1    
31.2    
31.2    
31.3    
31.4    
31.5    
31.6    
31.6    
31.7    
31.8    
31.9    
31.9    
32.0    
32.1    
32.2    
32.2    
32.3    
32.4    
32.5    
32.6    
32.6    
32.7    
32.8    
32.9    
32.9    
33.0    
33.1    
33.2    
33.3    
33.3    
33.4    
33.5    
33.6    
33.6    
33.7    
33.8    
33.9    
34.0    
34.0    
34.1    
34.2    
34.3    
34.3    
34.4    
34.5    
34.6    
34.7    
34.7    
34.8    
34.9    
35.0    
35.0    
35.1    
35.2    
35.3    
35.3    
35.4    
35.5    
35.6    
35.7    
35.7    
35.8    
35.9    
36.0    
36.0    
36.1    
36.2    
36.3    
36.4    
36.4    
36.5    
36.6    
36.7    
36.7    
36.8    
36.9    
37.0    
37.1    
37.1    
37.2    
37.3    
37.4    
37.4    
37.5    
37.6    
37.7    
37.8    
37.8    
37.9    
38.0    
38.1    
38.1    
38.2    
38.3    
38.4    
38.4    
38.5    
38.6    
38.7    
38.8    
38.8    
38.9    
39.0    
39.1    
39.1    
39.2    
39.3    
39.4    
39.5    
39.5    
39.6    
39.7    
39.8    
39.8    
39.9    
40.0    
40.1    
40.2    
40.2    
40.3    
40.4    
40.5    
40.5    
40.6    
40.7    
40.8    
40.9    
40.9    
41.0    
41.1    
41.2    
41.2    
41.3    
41.4    
41.5    
41.6    
41.6    
41.7    
41.8    
41.9    
41.9    
42.0    
42.1    
42.2    
42.2    
42.3    
42.4    
42.5    
42.6    
42.6    
42.7    
42.8    
42.9    
42.9    
43.0    
43.1    
43.2    
43.3    
43.3    
43.4    
43.5    
43.6    
43.6    
43.7    
43.8    
43.9    
44.0    
44.0    
44.1    
44.2    
44.3    
44.3    
44.4    
44.5    
44.6    
44.7    
44.7    
44.8    
44.9    
45.0    
45.0    
45.1    
45.2    
45.3    
45.3    
45.4    
45.5    
45.6    
45.7    
45.7    
45.8    
45.9    
46.0    
46.0    
46.1    
46.2    
46.3    
46.4    
46.4    
46.5    
46.6    
46.7    
46.7    
46.8    
46.9    
47.0    
47.1    
47.1    
47.2    
47.3    
47.4    
47.4    
47.5    
47.6    
47.7    
47.8    
47.8    
47.9    
48.0    
48.1    
48.1    
48.2    
48.3    
48.4    
48.4    
48.5    
48.6    
48.7    
48.8    
48.8    
48.9    
49.0    
49.1    
49.1    
49.2    
49.3    
49.4    
49.5    
49.5    
49.6    
49.7    
49.8    
49.8    
49.9    
50.0    
50.1    
50.2    
50.2    
50.3    
50.4    
50.5    
50.5    
50.6    
50.7    
50.8    
50.9    
50.9    
51.0    
51.1    
51.2    
51.2    
51.3    
51.4    
51.5    
51.6    
51.6    
51.7    
51.8    
51.9    
51.9    
52.0    
52.1    
52.2    
52.2    
52.3    
52.4    
52.5    
52.6    
52.6    
52.7    
52.8    
52.9    
52.9    
53.0    
53.1    
53.2    
53.3    
53.3    
53.4    
53.5    
53.6    
53.6    
53.7    
53.8    
53.9    
54.0    
54.0    
54.1    
54.2    
54.3    
54.3    
54.4    
54.5    
54.6    
54.7    
54.7    
54.8    
54.9    
55.0    
55.0    
55.1    
55.2    
55.3    
55.3    
55.4    
55.5    
55.6    
55.7    
55.7    
55.8    
55.9    
56.0    
56.0    
56.1    
56.2    
56.3    
56.4    
56.4    
56.5    
56.6    
56.7    
56.7    
56.8    
56.9    
57.0    
57.1    
57.1    
57.2    
57.3    
57.4    
57.4    
57.5    
57.6    
57.7    
57.8    
57.8    
57.9    
58.0    
58.1    
58.1    
58.2    
58.3    
58.4    
58.4    
58.5    
58.6    
58.7    
58.8    
58.8    
58.9    
59.0    
59.1    
59.1    
59.2    
59.3    
59.4    
59.5    
59.5    
59.6    
59.7    
59.8    
59.8    
59.9    
60.0    
60.1    
60.2    
60.2    
60.3    
60.4    
60.5    
60.5    
60.6    
60.7    
60.8    
60.9    
60.9    
61.0    
61.1    
61.2    
61.2    
61.3    
61.4    
61.5    
61.6    
61.6    
61.7    
61.8    
61.9    
61.9    
62.0    
62.1    
62.2    
62.2    
62.3    
62.4    
62.5    
62.6    
62.6    
62.7    
62.8    
62.9    
62.9    
63.0    
63.1    
63.2    
63.3    
63.3    
63.4    
63.5    
63.6    
63.6    
63.7    
63.8    
63.9    
64.0    
64.0    
64.1    
64.2    
64.3    
64.3    
64.4    
64.5    
64.6    
64.7    
64.7    
64.8    
64.9    
65.0    
65.0    
65.1    
65.2    
65.3    
65.3    
65.4    
65.5    
65.6    
65.7    
65.7    
65.8    
65.9    
66.0    
66.0    
66.1    
66.2    
66.3    
66.4    
66.4    
66.5    
66.6    
66.7    
66.7    
66.8    
66.9    
67.0    
67.1    
67.1    
67.2    
67.3    
67.4    
67.4    
67.5    
67.6    
67.7    
67.8    
67.8    
67.9    
68.0    
68.1    
68.1    
68.2    
68.3    
68.4    
68.4    
68.5    
68.6    
68.7    
68.8    
68.8    
68.9    
69.0    
69.1    
69.1    
69.2    
69.3    
69.4    
69.5    
69.5    
69.6    
69.7    
69.8    
69.8    
69.9    
70.0    
70.1    
70.2    
70.2    
70.3    
70.4    
70.5    
70.5    
70.6    
70.7    
70.8    
70.9    
70.9    
71.0    
71.1    
71.2    
71.2    
71.3    
71.4    
71.5    
71.6    
71.6    
71.7    
71.8    
71.9    
71.9    
72.0    
72.1    
72.2    
72.2    
72.3    
72.4    
72.5    
72.6    
72.6    
72.7    
72.8    
72.9    
72.9    
73.0    
73.1    
73.2    
73.3    
73.3    
73.4    
73.5    
73.6    
73.6    
73.7    
73.8    
73.9    
74.0    
74.0    
74.1    
74.2    
74.3    
74.3    
74.4    
74.5    
74.6    
74.7    
74.7    
74.8    
74.9    
75.0    
75.0    
75.1    
75.2    
75.3    
75.3    
75.4    
75.5    
75.6    
75.7    
75.7    
75.8    
75.9    
76.0    
76.0    
76.1    
76.2    
76.3    
76.4    
76.4    
76.5    
76.6    
76.7    
76.7    
76.8    
76.9    
77.0    
77.1    
77.1    
77.2    
77.3    
77.4    
77.4    
77.5    
77.6    
77.7    
77.8    
77.8    
77.9    
78.0    
78.1    
78.1    
78.2    
78.3    
78.4    
78.4    
78.5    
78.6    
78.7    
78.8    
78.8    
78.9    
79.0    
79.1    
79.1    
79.2    
79.3    
79.4    
79.5    
79.5    
79.6    
79.7    
79.8    
79.8    
79.9    
80.0    
80.1    
80.2    
80.2    
80.3    
80.4    
80.5    
80.5    
80.6    
80.7    
80.8    
80.9    
80.9    
81.0    
81.1    
81.2    
81.2    
81.3    
81.4    
81.5    
81.6    
81.6    
81.7    
81.8    
81.9    
81.9    
82.0    
82.1    
82.2    
82.2    
82.3    
82.4    
82.5    
82.6    
82.6    
82.7    
82.8    
82.9    
82.9    
83.0    
83.1    
83.2    
83.3    
83.3    
83.4    
83.5    
83.6    
83.6    
83.7    
83.8    
83.9    
84.0    
84.0    
84.1    
84.2    
84.3    
84.3    
84.4    
84.5    
84.6    
84.7    
84.7    
84.8    
84.9    
85.0    
85.0    
85.1    
85.2    
85.3    
85.3    
85.4    
85.5    
85.6    
85.7    
85.7    
85.8    
85.9    
86.0    
86.0    
86.1    
86.2    
86.3    
86.4    
86.4    
86.5    
86.6    
86.7    
86.7    
86.8    
86.9    
87.0    
87.1    
87.1    
87.2    
87.3    
87.4    
87.4    
87.5    
87.6    
87.7    
87.8    
87.8    
87.9    
88.0    
88.1    
88.1    
88.2    
88.3    
88.4    
88.4    
88.5    
88.6    
88.7    
88.8    
88.8    
88.9    
89.0    
89.1    
89.1    
89.2    
89.3    
89.4    
89.5    
89.5    
89.6    
89.7    
89.8    
89.8    
89.9    
90.0    
90.1    
90.2    
90.2    
90.3    
90.4    
90.5    
90.5    
90.6    
90.7    
90.8    
90.9    
90.9    
91.0    
91.1    
91.2    
91.2    
91.3    
91.4    
91.5    
91.6    
91.6    
91.7    
91.8    
91.9    
91.9    
92.0    
92.1    
92.2    
92.2    
92.3    
92.4    
92.5    
92.6    
92.6    
92.7    
92.8    
92.9    
92.9    
93.0    
93.1    
93.2    
93.3    
93.3    
93.4    
93.5    
93.6    
93.6    
93.7    
93.8    
93.9    
94.0    
94.0    
94.1    
94.2    
94.3    
94.3    
94.4    
94.5    
94.6    
94.7    
94.7    
94.8    
94.9    
95.0    
95.0    
95.1    
95.2    
95.3    
95.3    
95.4    
95.5    
95.6    
95.7    
95.7    
95.8    
95.9    
96.0    
96.0    
96.1    
96.2    
96.3    
96.4    
96.4    
96.5    
96.6    
96.7    
96.7    
96.8    
96.9    
97.0    
97.1    
97.1    
97.2    
97.3    
97.4    
97.4    
97.5    
97.6    
97.7    
97.8    
97.8    
97.9    
98.0    
98.1    
98.1    
98.2    
98.3    
98.4    
98.4    
98.5    
98.6    
98.7    
98.8    
98.8    
98.9    
99.0    
99.1    
99.1    
99.2    
99.3    
99.4    
99.5    
99.5    
99.6    
99.7    
99.8    
99.8    
99.9    
-found 51 predictions from path traversal
Error with prediction: snap lend_intergenic: 8020, rend_intergenic: 6470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13120, rend_intergenic: 8659  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30086, rend_intergenic: 14404  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52912, rend_intergenic: 47600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65401, rend_intergenic: 55244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71227, rend_intergenic: 69141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80897, rend_intergenic: 75302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93339, rend_intergenic: 83602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97871, rend_intergenic: 96738  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103766, rend_intergenic: 98394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105814, rend_intergenic: 104547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124379, rend_intergenic: 116284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133746, rend_intergenic: 128184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142831, rend_intergenic: 133912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145284, rend_intergenic: 142831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145585, rend_intergenic: 145362  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147613, rend_intergenic: 145725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153151, rend_intergenic: 148083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160410, rend_intergenic: 154281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188248, rend_intergenic: 174914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198590, rend_intergenic: 189012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217625, rend_intergenic: 198592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231538, rend_intergenic: 221944  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237586, rend_intergenic: 232377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 240561, rend_intergenic: 237618  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 249117, rend_intergenic: 241087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 265834, rend_intergenic: 250525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10339
-exon list size: 44


building trellis

2.2    
4.3    
6.5    
8.7    
10.9    
13.0    
15.2    
17.4    
19.6    
21.7    
23.9    
26.1    
28.3    
30.4    
32.6    
34.8    
37.0    
39.1    
41.3    
43.5    
45.7    
47.8    
50.0    
52.2    
54.3    
56.5    
58.7    
60.9    
63.0    
65.2    
67.4    
69.6    
71.7    
73.9    
76.1    
78.3    
80.4    
82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support