-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_27/scaffold_27_4044957-4238452

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 180297, 180383
Sorry, prediction pasa_asmbl_36223.p1 fails validation.
(AAC)	 GC	180297-180383	GT	AGG
(GTC)	 AG	180595-180744	GT	AGG
(GCT)	 AG	180833-181054	GT	GCG
(ATT)	 AG	181219-181295	GT	AAG
(GCA)	 AG	181523-181658	GT	AGG
(ATT)	 AG	181789-181884	GT	AGG
(GGA)	 AG	182006-182194	GT	AGG
(GGT)	 AG	182379-182567	AC	AAA
add_exon() Sorry, pasa_asmbl_36223.p1 181219-181295-terminal-2 is invalid.
-recovered pasa_asmbl_36223.p1, terminal, 181219, 181295
-recovered pasa_asmbl_36223.p1, terminal, 182379, 182567
-recovered pasa_asmbl_36223.p1, internal, 180595, 180744
-recovered pasa_asmbl_36223.p1, internal, 180833, 181054
-recovered pasa_asmbl_36223.p1, internal, 181219, 181295
-recovered pasa_asmbl_36223.p1, internal, 181523, 181658
-recovered pasa_asmbl_36223.p1, internal, 181789, 181884
-recovered pasa_asmbl_36223.p1, internal, 182006, 182194
Valid prediction for GeneMark_model.101749_t
Valid prediction for snap_scaffold_27-snap.985-T1
Valid prediction for snap_scaffold_27-snap.1011-T1
Valid prediction for GlimmerHMM_glimmerT_58532-T1
Valid prediction for Augustus_model.g39000.t1
Valid prediction for GeneMark_model.101771_t
Valid prediction for GeneMark_model.101751_t
Valid prediction for Augustus_model.g38989.t1
Valid prediction for snap_scaffold_27-snap.993-T1
Valid prediction for snap_scaffold_27-snap.1005-T1
Valid prediction for GeneMark_model.101768_t
Valid prediction for pasa_asmbl_36220.p1
Valid prediction for CodingQuarry_transcript_41781-T1
Valid prediction for snap_scaffold_27-snap.977-T1
Valid prediction for GlimmerHMM_glimmerT_58520-T1
Valid prediction for Augustus_model.g38998.t1
Valid prediction for GlimmerHMM_glimmerT_58516-T1
Valid prediction for GeneMark_model.101773_t
Valid prediction for GeneMark_model.101746_t
Valid prediction for snap_scaffold_27-snap.986-T1
Valid prediction for Augustus_model.g38999.t1
Valid prediction for Augustus_model.g38992.t1
Valid prediction for Augustus_model.g38994.t1
Valid prediction for GeneMark_model.101732_t
Valid prediction for GeneMark_model.101739_t
Valid prediction for GeneMark_model.101759_t
Valid prediction for GeneMark_model.101762_t
Couldn't classify 179261, 179299
Couldn't classify 180182, 180239
Sorry, prediction pasa_asmbl_36222.p1 fails validation.
(GTC)	 CG	179261-179299	GT	GGG
(ACA)	 AG	179394-179477	GT	AGG
(AGA)	 AG	179690-179851	GT	AGG
(GAA)	 AG	179986-180065	GT	AAG
(GTA)	 AG	180182-180239	AT	CCA
-recovered pasa_asmbl_36222.p1, internal, 179394, 179477
-recovered pasa_asmbl_36222.p1, internal, 179690, 179851
-recovered pasa_asmbl_36222.p1, internal, 179986, 180065
Valid prediction for snap_scaffold_27-snap.987-T1
Valid prediction for pasa_asmbl_36219.p1
Valid prediction for GlimmerHMM_glimmerT_58540-T1
Valid prediction for pasa_asmbl_36215.p1
Valid prediction for GeneMark_model.101730_t
Valid prediction for GlimmerHMM_glimmerT_58530-T1
Valid prediction for GlimmerHMM_glimmerT_58513-T1
Valid prediction for GeneMark_model.101740_t
Valid prediction for GeneMark_model.101766_t
Valid prediction for snap_scaffold_27-snap.995-T1
Valid prediction for snap_scaffold_27-snap.1008-T1
Valid prediction for snap_scaffold_27-snap.1014-T1
Valid prediction for GlimmerHMM_glimmerT_58519-T1
Valid prediction for GeneMark_model.101752_t
Valid prediction for GeneMark_model.101764_t
Valid prediction for GlimmerHMM_glimmerT_58523-T1
Couldn't classify 83147, 83177
Sorry, prediction pasa_asmbl_36218.p1 fails validation.
(CTG)	 CC	83147-83177	GT	AGG
(AGA)	 AG	83307-83434	GT	AGG
(AAT)	 AG	83520-83627	GT	AGG
(CAT)	 AG	83981-84154	GT	AGG
(ATG)	 AG	84388-84561	GT	GAG
(AAA)	 AG	84735-84839	GT	AGG
(GCT)	 AG	85184-85384	GT	AGG
(GTG)	 AG	85485-85626	GT	AGG
(GGA)	 AG	86223-86353	GT	AGG
(GAC)	 AG	86457-86537	GT	AGG
(GTC)	 AG	86656-86805	GT	AGG
(GAT)	 AG	87505-87624	GT	AGG
(ATC)	 AG	87702-87877	GT	AAG
(GGT)	 AG	88051-88283	GT	CTG
(CCA)	 AG	88570-88777	GT	ATG
(CAG)	 AG	89103-89274	GT	AAG
(CTG)	 AG	89552-89763	GT	AGG
(TGC)	 AG	90054-90162	GT	ACG
(AGG)	 AG	90255-90353	GT	ATG
(ACC)	 AG	90695-90872	GT	CGG
(GGG)	 AG	91002-91069	GT	AGG
(AAG)	 AG	92333-92455	GT	ATG
(TCA)	 AG	92612-92704	GT	AGG
(AAC)	 AG	92815-92899	GT	CGG
(GTA)	 AG	93020-93087	GT	AGG
(TAC)	 AG	93209-93325	GT	AGG
(GGT)	 AG	94986-95081	GT	CTG
(GCG)	 AG	95302-95533	GT	CTG
(CAA)	 AG	95649-95823	GT	AGG
(CTA)	 AG	96139-96367	TA	AGT
-recovered pasa_asmbl_36218.p1, initial, 84388, 84561
-recovered pasa_asmbl_36218.p1, terminal, 96139, 96367
-recovered pasa_asmbl_36218.p1, internal, 83307, 83434
-recovered pasa_asmbl_36218.p1, internal, 83520, 83627
-recovered pasa_asmbl_36218.p1, internal, 83981, 84154
-recovered pasa_asmbl_36218.p1, internal, 84388, 84561
-recovered pasa_asmbl_36218.p1, internal, 84735, 84839
-recovered pasa_asmbl_36218.p1, internal, 85184, 85384
-recovered pasa_asmbl_36218.p1, internal, 85485, 85626
-recovered pasa_asmbl_36218.p1, internal, 86223, 86353
-recovered pasa_asmbl_36218.p1, internal, 86457, 86537
-recovered pasa_asmbl_36218.p1, internal, 86656, 86805
-recovered pasa_asmbl_36218.p1, internal, 87505, 87624
-recovered pasa_asmbl_36218.p1, internal, 87702, 87877
-recovered pasa_asmbl_36218.p1, internal, 88051, 88283
-recovered pasa_asmbl_36218.p1, internal, 88570, 88777
-recovered pasa_asmbl_36218.p1, internal, 89103, 89274
-recovered pasa_asmbl_36218.p1, internal, 89552, 89763
-recovered pasa_asmbl_36218.p1, internal, 90054, 90162
-recovered pasa_asmbl_36218.p1, internal, 90255, 90353
-recovered pasa_asmbl_36218.p1, internal, 90695, 90872
-recovered pasa_asmbl_36218.p1, internal, 91002, 91069
-recovered pasa_asmbl_36218.p1, internal, 92333, 92455
-recovered pasa_asmbl_36218.p1, internal, 92612, 92704
-recovered pasa_asmbl_36218.p1, internal, 92815, 92899
-recovered pasa_asmbl_36218.p1, internal, 93020, 93087
-recovered pasa_asmbl_36218.p1, internal, 93209, 93325
-recovered pasa_asmbl_36218.p1, internal, 94986, 95081
-recovered pasa_asmbl_36218.p1, internal, 95302, 95533
-recovered pasa_asmbl_36218.p1, internal, 95649, 95823
Valid prediction for GlimmerHMM_glimmerT_58536-T1
Valid prediction for Augustus_model.g39008.t1
Valid prediction for HiQ_model.g39011.t1
Valid prediction for GlimmerHMM_glimmerT_58521-T1
Valid prediction for snap_scaffold_27-snap.984-T1
Couldn't classify 80892, 80998
Sorry, prediction pasa_asmbl_36560.p1 fails validation.
(ATG)	 GG	80130-80243	GT	CTG
(GAG)	 AG	80412-80535	GT	GGG
(GCT)	 AG	80632-80748	GT	AGG
(ACG)	 AG	80892-80998	CT	CCC
-recovered pasa_asmbl_36560.p1, initial, 80130, 80243
-recovered pasa_asmbl_36560.p1, internal, 80412, 80535
-recovered pasa_asmbl_36560.p1, internal, 80632, 80748
Valid prediction for GeneMark_model.101733_t
Valid prediction for GeneMark_model.101747_t
Valid prediction for GeneMark_model.101728_t
Valid prediction for snap_scaffold_27-snap.992-T1
Valid prediction for Augustus_model.g38997.t1
Valid prediction for HiQ_model.g38995.t1
Valid prediction for GeneMark_model.101758_t
Valid prediction for GeneMark_model.101743_t
Valid prediction for CodingQuarry_transcript_41776-T1
Valid prediction for GeneMark_model.101754_t
Valid prediction for GlimmerHMM_glimmerT_58525-T1
Valid prediction for GlimmerHMM_glimmerT_58524-T1
Valid prediction for GeneMark_model.101735_t
Valid prediction for snap_scaffold_27-snap.1001-T1
Valid prediction for snap_scaffold_27-snap.988-T1
Valid prediction for snap_scaffold_27-snap.1009-T1
Valid prediction for GlimmerHMM_glimmerT_58515-T1
Valid prediction for snap_scaffold_27-snap.990-T1
Valid prediction for snap_scaffold_27-snap.991-T1
Valid prediction for HiQ_model.g39005.t1
Valid prediction for GeneMark_model.101757_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_27-snap.989-T1
Valid prediction for GlimmerHMM_glimmerT_58538-T1
Valid prediction for snap_scaffold_27-snap.1003-T1
Valid prediction for Augustus_model.g39009.t1
Valid prediction for GeneMark_model.101767_t
Valid prediction for snap_scaffold_27-snap.982-T1
Valid prediction for Augustus_model.g39007.t1
Valid prediction for Augustus_model.g39004.t1
Valid prediction for GeneMark_model.101745_t
Valid prediction for CodingQuarry_transcript_41780-T1
Valid prediction for snap_scaffold_27-snap.1006-T1
Valid prediction for Augustus_model.g38993.t1
Valid prediction for snap_scaffold_27-snap.996-T1
Valid prediction for snap_scaffold_27-snap.1010-T1
Valid prediction for GeneMark_model.101761_t
Valid prediction for GlimmerHMM_glimmerT_58537-T1
Valid prediction for snap_scaffold_27-snap.1007-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_27-snap.980-T1
Valid prediction for GeneMark_model.101734_t
Valid prediction for GlimmerHMM_glimmerT_58534-T1
Valid prediction for GeneMark_model.101744_t
Valid prediction for HiQ_model.g39003.t1
Valid prediction for snap_scaffold_27-snap.979-T1
Valid prediction for pasa_asmbl_36898.p1
Valid prediction for snap_scaffold_27-snap.1000-T1
Valid prediction for GeneMark_model.101753_t
Valid prediction for snap_scaffold_27-snap.1013-T1
Valid prediction for snap_scaffold_27-snap.978-T1
Valid prediction for snap_scaffold_27-snap.1015-T1
Valid prediction for CodingQuarry_transcript_41779-T1
Valid prediction for GlimmerHMM_glimmerT_58528-T1
Couldn't classify 41335, 41451
Sorry, prediction pasa_asmbl_36903.p1 fails validation.
(GTG)	 AG	41335-41451	GT	AGG
(TTG)	 AG	42078-42182	GT	AGG
(ACG)	 AG	42309-42422	GT	GGG
(CCT)	 AG	42537-42685	GT	AGG
(GAT)	 AG	42849-42879	GT	GGG
(ACC)	 AG	42990-43132	GT	AGG
(CAA)	 AG	43269-43315	GT	GAG
(GTT)	 AG	43478-43542	AT	AGA
add_exon() Sorry, pasa_asmbl_36903.p1 43269-43315-terminal-2 is invalid.
-recovered pasa_asmbl_36903.p1, terminal, 43269, 43315
-recovered pasa_asmbl_36903.p1, terminal, 43478, 43542
-recovered pasa_asmbl_36903.p1, internal, 41335, 41451
-recovered pasa_asmbl_36903.p1, internal, 42078, 42182
-recovered pasa_asmbl_36903.p1, internal, 42309, 42422
-recovered pasa_asmbl_36903.p1, internal, 42537, 42685
-recovered pasa_asmbl_36903.p1, internal, 42849, 42879
-recovered pasa_asmbl_36903.p1, internal, 42990, 43132
-recovered pasa_asmbl_36903.p1, internal, 43269, 43315
Valid prediction for snap_scaffold_27-snap.1002-T1
Valid prediction for GlimmerHMM_glimmerT_58517-T1
Valid prediction for GeneMark_model.101731_t
Valid prediction for snap_scaffold_27-snap.1012-T1
Valid prediction for snap_scaffold_27-snap.1016-T1
Valid prediction for GlimmerHMM_glimmerT_58514-T1
Valid prediction for GeneMark_model.101736_t
Valid prediction for GeneMark_model.101755_t
Couldn't classify 161743, 161785
Couldn't classify 162886, 162906
Sorry, prediction pasa_asmbl_36896.p1 fails validation.
(CTC)	 AG	161743-161785	GT	AGG
(CGC)	 AG	162260-162349	GT	AGG
(TCG)	 AG	162519-162670	GT	TGG
(GCC)	 AG	162886-162906	CT	GTC
-recovered pasa_asmbl_36896.p1, internal, 161743, 161785
-recovered pasa_asmbl_36896.p1, internal, 162260, 162349
-recovered pasa_asmbl_36896.p1, internal, 162519, 162670
Valid prediction for GeneMark_model.101770_t
Valid prediction for GlimmerHMM_glimmerT_58529-T1
Valid prediction for GlimmerHMM_glimmerT_58522-T1
Valid prediction for snap_scaffold_27-snap.999-T1
Valid prediction for GlimmerHMM_glimmerT_58539-T1
Valid prediction for pasa_asmbl_36900.p1
Valid prediction for GeneMark_model.101756_t
Valid prediction for GlimmerHMM_glimmerT_58541-T1
Valid prediction for snap_scaffold_27-snap.983-T1
Valid prediction for GlimmerHMM_glimmerT_58527-T1
Valid prediction for GeneMark_model.101742_t
Valid prediction for GeneMark_model.101750_t
Valid prediction for GlimmerHMM_glimmerT_58531-T1
Valid prediction for Augustus_model.g39012.t1
Valid prediction for GeneMark_model.101737_t
Valid prediction for Augustus_model.g39006.t1
Valid prediction for GeneMark_model.101748_t
Valid prediction for Augustus_model.g38990.t1
Valid prediction for Augustus_model.g39010.t1
Valid prediction for GeneMark_model.101729_t
Valid prediction for GeneMark_model.101738_t
Valid prediction for GeneMark_model.101741_t
Valid prediction for Augustus_model.g39013.t1
Valid prediction for GlimmerHMM_glimmerT_58526-T1
Valid prediction for snap_scaffold_27-snap.997-T1
Valid prediction for snap_scaffold_27-snap.1004-T1
Valid prediction for GeneMark_model.101772_t
Valid prediction for snap_scaffold_27-snap.998-T1
Valid prediction for GeneMark_model.101760_t
Valid prediction for GeneMark_model.101765_t
Valid prediction for HiQ_model.g39001.t1
Couldn't classify 158561, 158584
Couldn't classify 159772, 159792
Sorry, prediction pasa_asmbl_37132.p1 fails validation.
(GAT)	 AG	158561-158584	GT	AGG
(AGG)	 AG	158770-158880	GT	AGG
(GCC)	 AG	158996-159139	GT	CGG
(ATG)	 AG	159340-159450	GT	AGG
(GTG)	 AG	159772-159792	AG	CCA
-recovered pasa_asmbl_37132.p1, initial, 159340, 159450
-recovered pasa_asmbl_37132.p1, internal, 158561, 158584
-recovered pasa_asmbl_37132.p1, internal, 158770, 158880
-recovered pasa_asmbl_37132.p1, internal, 158996, 159139
-recovered pasa_asmbl_37132.p1, internal, 159340, 159450
Valid prediction for CodingQuarry_transcript_41778-T1
Valid prediction for snap_scaffold_27-snap.981-T1
Valid prediction for GlimmerHMM_glimmerT_58533-T1
Valid prediction for Augustus_model.g38991.t1
Valid prediction for GlimmerHMM_glimmerT_58518-T1
Valid prediction for snap_scaffold_27-snap.994-T1
Valid prediction for Augustus_model.g39002.t1
Valid prediction for Augustus_model.g38996.t1
Valid prediction for GeneMark_model.101774_t
Valid prediction for GlimmerHMM_glimmerT_58535-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 36844, rend_intergenic: 29914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96367, rend_intergenic: 92659  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157121, rend_intergenic: 151355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161197, rend_intergenic: 160313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164863, rend_intergenic: 164766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167429, rend_intergenic: 165035  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 193496
-exon list size: 717


building trellis

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44.8    
44.9    
45.1    
45.2    
45.3    
45.5    
45.6    
45.8    
45.9    
46.0    
46.2    
46.3    
46.5    
46.6    
46.7    
46.9    
47.0    
47.1    
47.3    
47.4    
47.6    
47.7    
47.8    
48.0    
48.1    
48.3    
48.4    
48.5    
48.7    
48.8    
49.0    
49.1    
49.2    
49.4    
49.5    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.5    
50.6    
50.8    
50.9    
51.0    
51.2    
51.3    
51.5    
51.6    
51.7    
51.9    
52.0    
52.2    
52.3    
52.4    
52.6    
52.7    
52.9    
53.0    
53.1    
53.3    
53.4    
53.5    
53.7    
53.8    
54.0    
54.1    
54.2    
54.4    
54.5    
54.7    
54.8    
54.9    
55.1    
55.2    
55.4    
55.5    
55.6    
55.8    
55.9    
56.1    
56.2    
56.3    
56.5    
56.6    
56.7    
56.9    
57.0    
57.2    
57.3    
57.4    
57.6    
57.7    
57.9    
58.0    
58.1    
58.3    
58.4    
58.6    
58.7    
58.8    
59.0    
59.1    
59.2    
59.4    
59.5    
59.7    
59.8    
59.9    
60.1    
60.2    
60.4    
60.5    
60.6    
60.8    
60.9    
61.1    
61.2    
61.3    
61.5    
61.6    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.6    
62.7    
62.9    
63.0    
63.1    
63.3    
63.4    
63.6    
63.7    
63.8    
64.0    
64.1    
64.3    
64.4    
64.5    
64.7    
64.8    
65.0    
65.1    
65.2    
65.4    
65.5    
65.6    
65.8    
65.9    
66.1    
66.2    
66.3    
66.5    
66.6    
66.8    
66.9    
67.0    
67.2    
67.3    
67.5    
67.6    
67.7    
67.9    
68.0    
68.2    
68.3    
68.4    
68.6    
68.7    
68.8    
69.0    
69.1    
69.3    
69.4    
69.5    
69.7    
69.8    
70.0    
70.1    
70.2    
70.4    
70.5    
70.7    
70.8    
70.9    
71.1    
71.2    
71.3    
71.5    
71.6    
71.8    
71.9    
72.0    
72.2    
72.3    
72.5    
72.6    
72.7    
72.9    
73.0    
73.2    
73.3    
73.4    
73.6    
73.7    
73.9    
74.0    
74.1    
74.3    
74.4    
74.5    
74.7    
74.8    
75.0    
75.1    
75.2    
75.4    
75.5    
75.7    
75.8    
75.9    
76.1    
76.2    
76.4    
76.5    
76.6    
76.8    
76.9    
77.1    
77.2    
77.3    
77.5    
77.6    
77.7    
77.9    
78.0    
78.2    
78.3    
78.4    
78.6    
78.7    
78.9    
79.0    
79.1    
79.3    
79.4    
79.6    
79.7    
79.8    
80.0    
80.1    
80.3    
80.4    
80.5    
80.7    
80.8    
80.9    
81.1    
81.2    
81.4    
81.5    
81.6    
81.8    
81.9    
82.1    
82.2    
82.3    
82.5    
82.6    
82.8    
82.9    
83.0    
83.2    
83.3    
83.4    
83.6    
83.7    
83.9    
84.0    
84.1    
84.3    
84.4    
84.6    
84.7    
84.8    
85.0    
85.1    
85.3    
85.4    
85.5    
85.7    
85.8    
86.0    
86.1    
86.2    
86.4    
86.5    
86.6    
86.8    
86.9    
87.1    
87.2    
87.3    
87.5    
87.6    
87.8    
87.9    
88.0    
88.2    
88.3    
88.5    
88.6    
88.7    
88.9    
89.0    
89.2    
89.3    
89.4    
89.6    
89.7    
89.8    
90.0    
90.1    
90.3    
90.4    
90.5    
90.7    
90.8    
91.0    
91.1    
91.2    
91.4    
91.5    
91.7    
91.8    
91.9    
92.1    
92.2    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.2    
93.3    
93.5    
93.6    
93.7    
93.9    
94.0    
94.2    
94.3    
94.4    
94.6    
94.7    
94.9    
95.0    
95.1    
95.3    
95.4    
95.5    
95.7    
95.8    
96.0    
96.1    
96.2    
96.4    
96.5    
96.7    
96.8    
96.9    
97.1    
97.2    
97.4    
97.5    
97.6    
97.8    
97.9    
98.1    
98.2    
98.3    
98.5    
98.6    
98.7    
98.9    
99.0    
99.2    
99.3    
99.4    
99.6    
99.7    
99.9    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 36844, rend_intergenic: 29914  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96367, rend_intergenic: 92659  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157121, rend_intergenic: 151355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161197, rend_intergenic: 160313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164863, rend_intergenic: 164766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167429, rend_intergenic: 165035  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 27 predictions persist after filtering for low support