-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_27/scaffold_27_3842980-4048055 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.101715_t Valid prediction for HiQ_model.g38982.t1 Valid prediction for GeneMark_model.101697_t Valid prediction for snap_scaffold_27-snap.977-T1 Valid prediction for GlimmerHMM_glimmerT_58511-T1 Valid prediction for GeneMark_model.101728_t Valid prediction for GeneMark_model.101714_t Valid prediction for snap_scaffold_27-snap.937-T1 Valid prediction for GeneMark_model.101706_t Couldn't classify 127507, 127605 Sorry, prediction pasa_asmbl_36201.p1 fails validation. (ATG) AA 124670-124713 GT CAG (GGA) AG 124823-124901 GT AAG (GCT) AG 125108-125266 GT AGG (TCG) AG 125370-125466 GT AGG (GTG) AG 125563-125639 GT AGG (GAT) AG 125732-125936 GT AGG (CAA) AG 126121-126272 GT AGG (CTC) AG 126370-126443 GT CGG (CGA) AG 126926-127049 GT AGG (CAA) AG 127507-127605 GT AGG -recovered pasa_asmbl_36201.p1, initial, 124670, 124713 -recovered pasa_asmbl_36201.p1, internal, 124823, 124901 -recovered pasa_asmbl_36201.p1, internal, 125108, 125266 -recovered pasa_asmbl_36201.p1, internal, 125370, 125466 -recovered pasa_asmbl_36201.p1, internal, 125563, 125639 -recovered pasa_asmbl_36201.p1, internal, 125732, 125936 -recovered pasa_asmbl_36201.p1, internal, 126121, 126272 -recovered pasa_asmbl_36201.p1, internal, 126370, 126443 -recovered pasa_asmbl_36201.p1, internal, 126926, 127049 -recovered pasa_asmbl_36201.p1, internal, 127507, 127605 Valid prediction for GeneMark_model.101725_t Valid prediction for GlimmerHMM_glimmerT_58483-T1 Valid prediction for snap_scaffold_27-snap.945-T1 Valid prediction for snap_scaffold_27-snap.961-T1 Valid prediction for HiQ_model.g38980.t1 Valid prediction for GeneMark_model.101723_t Valid prediction for snap_scaffold_27-snap.940-T1 Valid prediction for Augustus_model.g38989.t1 Valid prediction for GeneMark_model.101691_t Valid prediction for GlimmerHMM_glimmerT_58502-T1 Valid prediction for Augustus_model.g38979.t1 Valid prediction for GeneMark_model.101684_t Valid prediction for snap_scaffold_27-snap.960-T1 Valid prediction for snap_scaffold_27-snap.954-T1 Valid prediction for snap_scaffold_27-snap.974-T1 Valid prediction for snap_scaffold_27-snap.970-T1 Valid prediction for GeneMark_model.101708_t Valid prediction for GlimmerHMM_glimmerT_58510-T1 Valid prediction for GlimmerHMM_glimmerT_58501-T1 Valid prediction for GlimmerHMM_glimmerT_58486-T1 Valid prediction for GeneMark_model.101709_t Valid prediction for pasa_asmbl_36212.p2 Valid prediction for GeneMark_model.101704_t Valid prediction for Augustus_model.g38984.t1 Valid prediction for Augustus_model.g38968.t1 Valid prediction for snap_scaffold_27-snap.959-T1 Valid prediction for GeneMark_model.101710_t Valid prediction for snap_scaffold_27-snap.942-T1 Valid prediction for GlimmerHMM_glimmerT_58506-T1 Valid prediction for GeneMark_model.101678_t Valid prediction for GeneMark_model.101702_t Valid prediction for GeneMark_model.101695_t Valid prediction for snap_scaffold_27-snap.968-T1 Valid prediction for snap_scaffold_27-snap.944-T1 Valid prediction for GeneMark_model.101701_t Valid prediction for GeneMark_model.101718_t Valid prediction for GlimmerHMM_glimmerT_58503-T1 Couldn't classify 23658, 23773 Sorry, prediction pasa_asmbl_36189.p1 fails validation. (ACT) AG 23658-23773 GT ATG (CTA) AG 23957-24155 GT AGG (GCG) AG 24418-24498 GT GGG (GGG) AG 24665-24844 GT AGG (GGT) AG 24976-25074 GT AGG (GAG) AG 25304-25417 GT AGG (CTG) AG 25593-25664 GT AGG (ATG) AG 25909-26028 GT AGG (GAC) AG 26122-26204 GT AGG (CTT) AG 26540-26645 GT CGG (TGG) AG 26776-26856 GT TGG (GAC) AG 27092-27187 GC GAG -recovered pasa_asmbl_36189.p1, initial, 25909, 26028 -recovered pasa_asmbl_36189.p1, terminal, 27092, 27187 -recovered pasa_asmbl_36189.p1, internal, 23658, 23773 -recovered pasa_asmbl_36189.p1, internal, 23957, 24155 -recovered pasa_asmbl_36189.p1, internal, 24418, 24498 -recovered pasa_asmbl_36189.p1, internal, 24665, 24844 -recovered pasa_asmbl_36189.p1, internal, 24976, 25074 -recovered pasa_asmbl_36189.p1, internal, 25304, 25417 -recovered pasa_asmbl_36189.p1, internal, 25593, 25664 -recovered pasa_asmbl_36189.p1, internal, 25909, 26028 -recovered pasa_asmbl_36189.p1, internal, 26122, 26204 -recovered pasa_asmbl_36189.p1, internal, 26540, 26645 -recovered pasa_asmbl_36189.p1, internal, 26776, 26856 -recovered pasa_asmbl_36189.p1, internal, 27092, 27187 Valid prediction for snap_scaffold_27-snap.971-T1 Valid prediction for GlimmerHMM_glimmerT_58505-T1 Valid prediction for GeneMark_model.101717_t Valid prediction for snap_scaffold_27-snap.958-T1 Valid prediction for Augustus_model.g38971.t1 Valid prediction for GeneMark_model.101689_t Valid prediction for Augustus_model.g38987.t1 Valid prediction for Augustus_model.g38972.t1 Couldn't classify 136390, 136472 Couldn't classify 161616, 161677 Couldn't classify 162090, 162117 Sorry, prediction pasa_asmbl_36207.p1 fails validation. (TGT) TG 136390-136472 GT TTG (TGT) AG 137516-137571 GT AGG (ACA) AG 137916-138007 GT TGG (GAA) AG 138171-138222 GT AGG (ATA) AG 138393-138463 GT TGG (CTG) AG 138824-138945 GT TTG (CTA) AG 139630-139763 GT AGG (GAT) AG 140146-140306 GT AGG (GAG) AG 140731-140823 GT ACG (CTG) AG 140978-141133 GT AGG (CCT) AG 142368-142540 GT AGG (AGC) AG 142811-143006 GT AGG (TAC) AG 143135-143173 GT TGG (GAC) AG 143398-143528 GT AGG (ATA) AG 144751-144852 GT AAG (ACG) AG 147349-147433 GT ACG (ATC) AG 148465-148558 GT CTG (ACT) AG 148675-148755 GT GAG (GCT) AG 148929-149025 GT AGG (CTT) AG 149615-149732 GT AGG (GGA) AG 149852-150031 GT AGG (TGT) AG 150518-150682 GT TGG (TCC) AG 151539-151814 GT TGG (CCA) AG 152119-152260 GT CAG (AAT) AG 152836-152993 GT GGG (GTG) AG 153088-153216 GT AGG (GAG) AG 153366-153497 GT AGG (GCC) AG 153727-153911 GT GGG (CTA) AG 154735-154910 GT CGG (ATC) AG 155034-155136 GT AGG (CAC) AG 155382-155767 GT GGG (ATC) AG 156415-156473 GT AGG (GAC) AG 158286-158321 GT AGG (CAC) AG 159555-159686 GT GAG (GAC) AG 159808-159874 GT CAG (ACT) AG 161240-161382 GT AGG (GAG) AG 161616-161677 AT CAA (CCA) AC 162090-162117 TG AAT add_exon() Sorry, pasa_asmbl_36207.p1 138171-138222-terminal-3 is invalid. -recovered pasa_asmbl_36207.p1, terminal, 138171, 138222 add_exon() Sorry, pasa_asmbl_36207.p1 139630-139763-terminal-2 is invalid. -recovered pasa_asmbl_36207.p1, terminal, 139630, 139763 -recovered pasa_asmbl_36207.p1, internal, 137516, 137571 -recovered pasa_asmbl_36207.p1, internal, 137916, 138007 -recovered pasa_asmbl_36207.p1, internal, 138171, 138222 -recovered pasa_asmbl_36207.p1, internal, 138393, 138463 -recovered pasa_asmbl_36207.p1, internal, 138824, 138945 -recovered pasa_asmbl_36207.p1, internal, 139630, 139763 -recovered pasa_asmbl_36207.p1, internal, 140146, 140306 -recovered pasa_asmbl_36207.p1, internal, 140731, 140823 -recovered pasa_asmbl_36207.p1, internal, 140978, 141133 -recovered pasa_asmbl_36207.p1, internal, 142368, 142540 -recovered pasa_asmbl_36207.p1, internal, 142811, 143006 -recovered pasa_asmbl_36207.p1, internal, 143135, 143173 -recovered pasa_asmbl_36207.p1, internal, 143398, 143528 -recovered pasa_asmbl_36207.p1, internal, 144751, 144852 -recovered pasa_asmbl_36207.p1, internal, 147349, 147433 -recovered pasa_asmbl_36207.p1, internal, 148465, 148558 -recovered pasa_asmbl_36207.p1, internal, 148675, 148755 -recovered pasa_asmbl_36207.p1, internal, 148929, 149025 -recovered pasa_asmbl_36207.p1, internal, 149615, 149732 -recovered pasa_asmbl_36207.p1, internal, 149852, 150031 -recovered pasa_asmbl_36207.p1, internal, 150518, 150682 -recovered pasa_asmbl_36207.p1, internal, 151539, 151814 -recovered pasa_asmbl_36207.p1, internal, 152119, 152260 -recovered pasa_asmbl_36207.p1, internal, 152836, 152993 -recovered pasa_asmbl_36207.p1, internal, 153088, 153216 -recovered pasa_asmbl_36207.p1, internal, 153366, 153497 -recovered pasa_asmbl_36207.p1, internal, 153727, 153911 -recovered pasa_asmbl_36207.p1, internal, 154735, 154910 -recovered pasa_asmbl_36207.p1, internal, 155034, 155136 -recovered pasa_asmbl_36207.p1, internal, 155382, 155767 -recovered pasa_asmbl_36207.p1, internal, 156415, 156473 -recovered pasa_asmbl_36207.p1, internal, 158286, 158321 -recovered pasa_asmbl_36207.p1, internal, 159555, 159686 -recovered pasa_asmbl_36207.p1, internal, 159808, 159874 -recovered pasa_asmbl_36207.p1, internal, 161240, 161382 Valid prediction for GeneMark_model.101674_t Valid prediction for pasa_asmbl_36193.p1 Valid prediction for CodingQuarry_transcript_41770-T1 Valid prediction for GeneMark_model.101700_t Valid prediction for GlimmerHMM_glimmerT_58484-T1 Valid prediction for GlimmerHMM_glimmerT_58488-T1 Valid prediction for GeneMark_model.101727_t Valid prediction for GeneMark_model.101676_t Valid prediction for GlimmerHMM_glimmerT_58507-T1 Valid prediction for GeneMark_model.101716_t Valid prediction for Augustus_model.g38969.t1 Valid prediction for GeneMark_model.101680_t Valid prediction for snap_scaffold_27-snap.957-T1 Valid prediction for GeneMark_model.101713_t Valid prediction for GeneMark_model.101693_t Valid prediction for snap_scaffold_27-snap.975-T1 Valid prediction for GeneMark_model.101722_t Valid prediction for GlimmerHMM_glimmerT_58485-T1 Valid prediction for snap_scaffold_27-snap.976-T1 Couldn't classify 128315, 128377 Sorry, prediction pasa_asmbl_36203.p1 fails validation. (GGG) GG 128315-128377 GT AGG (CTC) AG 128795-128912 GT GGG (CCC) AG 129242-129345 GT GGG (GTT) AG 129465-129557 GT AGG (TAC) AG 129669-129758 GT AGG (CAC) AG 129890-130093 GT AGG (GGG) AG 130208-130278 GT AAG (CGC) AG 130567-130654 GT AGG (ATT) AG 130742-130822 GT AGG (GGG) AG 130956-131048 GT AGG (GCT) AG 131162-131336 GT AGG (ACG) AG 131446-131585 GT GGG (TAT) AG 131682-131783 GT AGG (TTG) AG 131956-132104 GT AAG (GGA) AG 132237-132365 GT GTG (CCA) AG 132488-132696 GT AGG (AGG) AG 132842-133070 GT AAG (CAC) AG 133472-133582 GT ATG (TCG) AG 133684-133810 GT TGG (CCG) AG 133921-133998 GT CGG (GTC) AG 134174-134197 AC AAA -recovered pasa_asmbl_36203.p1, terminal, 134174, 134197 -recovered pasa_asmbl_36203.p1, internal, 128795, 128912 -recovered pasa_asmbl_36203.p1, internal, 129242, 129345 -recovered pasa_asmbl_36203.p1, internal, 129465, 129557 -recovered pasa_asmbl_36203.p1, internal, 129669, 129758 -recovered pasa_asmbl_36203.p1, internal, 129890, 130093 -recovered pasa_asmbl_36203.p1, internal, 130208, 130278 -recovered pasa_asmbl_36203.p1, internal, 130567, 130654 -recovered pasa_asmbl_36203.p1, internal, 130742, 130822 -recovered pasa_asmbl_36203.p1, internal, 130956, 131048 -recovered pasa_asmbl_36203.p1, internal, 131162, 131336 -recovered pasa_asmbl_36203.p1, internal, 131446, 131585 -recovered pasa_asmbl_36203.p1, internal, 131682, 131783 -recovered pasa_asmbl_36203.p1, internal, 131956, 132104 -recovered pasa_asmbl_36203.p1, internal, 132237, 132365 -recovered pasa_asmbl_36203.p1, internal, 132488, 132696 -recovered pasa_asmbl_36203.p1, internal, 132842, 133070 -recovered pasa_asmbl_36203.p1, internal, 133472, 133582 -recovered pasa_asmbl_36203.p1, internal, 133684, 133810 -recovered pasa_asmbl_36203.p1, internal, 133921, 133998 Couldn't classify 28902, 29013 Couldn't classify 29204, 29282 Sorry, prediction CodingQuarry_transcript_41769-T1 fails validation. (ATG) GG 20912-20938 GT GGG (GAG) AG 23371-23529 GT ATG (ACT) AG 23658-23773 GT ATG (CTA) AG 23957-24155 GT AGG (GCG) AG 24418-24498 GT GGG (GGG) AG 24665-24844 GT AGG (GGT) AG 24976-25074 GT AGG (GAG) AG 25304-25417 GT AGG (CTG) AG 25593-25664 GT AGG (ATG) AG 25909-26028 GT AGG (GAC) AG 26122-26204 GT AGG (CTT) AG 26540-26645 GT CGG (TGG) AG 26776-26856 GT TGG (GAC) AG 27092-27183 GT ACG (TCA) AG 27364-27458 GT CGG (GTT) AG 27598-27644 GT AGG (GTC) AG 28287-28367 GT CGG (GCT) AG 28479-28584 GT AGG (GGC) AG 28682-28799 GT AGG (GTA) AG 28902-29013 AC GAA (AGG) GC 29204-29282 GT TGG (CTC) AG 29520-29588 GT AGG (TGA) AG 29701-29785 GT AGG (CTT) AG 29939-30098 GT AGG (GTG) AG 30504-30587 GT AGG (ATG) AG 30754-30847 GT AGG (ACA) AG 30934-30989 GT AGG (TAC) AG 31136-31271 GT GAG (GCA) AG 31495-31565 GT AGG (GGG) AG 31642-31739 GT AGG (CAT) AG 31838-31937 GT TGG (ACG) AG 32056-32082 CC GAC -recovered CodingQuarry_transcript_41769-T1, initial, 20912, 20938 -recovered CodingQuarry_transcript_41769-T1, initial, 25909, 26028 -recovered CodingQuarry_transcript_41769-T1, initial, 30754, 30847 add_exon() Sorry, CodingQuarry_transcript_41769-T1 30754-30847-terminal-3 is invalid. -recovered CodingQuarry_transcript_41769-T1, terminal, 30754, 30847 -recovered CodingQuarry_transcript_41769-T1, terminal, 32056, 32082 -recovered CodingQuarry_transcript_41769-T1, internal, 23371, 23529 -recovered CodingQuarry_transcript_41769-T1, internal, 23658, 23773 -recovered CodingQuarry_transcript_41769-T1, internal, 23957, 24155 -recovered CodingQuarry_transcript_41769-T1, internal, 24418, 24498 -recovered CodingQuarry_transcript_41769-T1, internal, 24665, 24844 -recovered CodingQuarry_transcript_41769-T1, internal, 24976, 25074 -recovered CodingQuarry_transcript_41769-T1, internal, 25304, 25417 -recovered CodingQuarry_transcript_41769-T1, internal, 25593, 25664 -recovered CodingQuarry_transcript_41769-T1, internal, 25909, 26028 -recovered CodingQuarry_transcript_41769-T1, internal, 26122, 26204 -recovered CodingQuarry_transcript_41769-T1, internal, 26540, 26645 -recovered CodingQuarry_transcript_41769-T1, internal, 26776, 26856 -recovered CodingQuarry_transcript_41769-T1, internal, 27092, 27183 -recovered CodingQuarry_transcript_41769-T1, internal, 27364, 27458 -recovered CodingQuarry_transcript_41769-T1, internal, 27598, 27644 -recovered CodingQuarry_transcript_41769-T1, internal, 28287, 28367 -recovered CodingQuarry_transcript_41769-T1, internal, 28479, 28584 -recovered CodingQuarry_transcript_41769-T1, internal, 28682, 28799 -recovered CodingQuarry_transcript_41769-T1, internal, 29520, 29588 -recovered CodingQuarry_transcript_41769-T1, internal, 29701, 29785 -recovered CodingQuarry_transcript_41769-T1, internal, 29939, 30098 -recovered CodingQuarry_transcript_41769-T1, internal, 30504, 30587 -recovered CodingQuarry_transcript_41769-T1, internal, 30754, 30847 -recovered CodingQuarry_transcript_41769-T1, internal, 30934, 30989 -recovered CodingQuarry_transcript_41769-T1, internal, 31136, 31271 -recovered CodingQuarry_transcript_41769-T1, internal, 31495, 31565 -recovered CodingQuarry_transcript_41769-T1, internal, 31642, 31739 -recovered CodingQuarry_transcript_41769-T1, internal, 31838, 31937 Valid prediction for GlimmerHMM_glimmerT_58504-T1 Valid prediction for snap_scaffold_27-snap.964-T1 Valid prediction for snap_scaffold_27-snap.965-T1 Valid prediction for snap_scaffold_27-snap.966-T1 Valid prediction for GeneMark_model.101720_t Valid prediction for GeneMark_model.101698_t Couldn't classify 115259, 115738 Sorry, prediction pasa_asmbl_36199.p1 fails validation. (GTA) GG 115259-115738 GT AGG (CTG) AG 115920-116097 GT ATG (TGG) AG 116209-116318 GT AAG (CAT) AG 116550-116688 GT CTG (TGA) AG 116927-117077 GT GGG (GCC) AG 117348-117471 GT AGG (TCA) AG 117564-117635 GT CGG (GAA) AG 117835-117974 GT CTG (GAT) AG 118227-118399 GT GAG (TGG) AG 119394-119468 GT AGG (GTG) AG 119803-119991 GT GGG (ACC) AG 120156-120270 GT AGG (CGA) AG 120355-120512 GT AAG (TCA) AG 120654-120811 AA GAA -recovered pasa_asmbl_36199.p1, terminal, 120654, 120811 -recovered pasa_asmbl_36199.p1, internal, 115920, 116097 -recovered pasa_asmbl_36199.p1, internal, 116209, 116318 -recovered pasa_asmbl_36199.p1, internal, 116550, 116688 -recovered pasa_asmbl_36199.p1, internal, 116927, 117077 -recovered pasa_asmbl_36199.p1, internal, 117348, 117471 -recovered pasa_asmbl_36199.p1, internal, 117564, 117635 -recovered pasa_asmbl_36199.p1, internal, 117835, 117974 -recovered pasa_asmbl_36199.p1, internal, 118227, 118399 -recovered pasa_asmbl_36199.p1, internal, 119394, 119468 -recovered pasa_asmbl_36199.p1, internal, 119803, 119991 -recovered pasa_asmbl_36199.p1, internal, 120156, 120270 -recovered pasa_asmbl_36199.p1, internal, 120355, 120512 Valid prediction for GlimmerHMM_glimmerT_58498-T1 Valid prediction for HiQ_model.g38981.t1 Valid prediction for GeneMark_model.101711_t Valid prediction for snap_scaffold_27-snap.956-T1 Sorry, intron length (5) is less than minimum required (10) -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.101703_t Valid prediction for GeneMark_model.101705_t Valid prediction for snap_scaffold_27-snap.938-T1 Valid prediction for snap_scaffold_27-snap.939-T1 Valid prediction for GeneMark_model.101707_t Valid prediction for GlimmerHMM_glimmerT_58490-T1 Valid prediction for GeneMark_model.101677_t Valid prediction for GeneMark_model.101721_t Valid prediction for GlimmerHMM_glimmerT_58494-T1 Couldn't classify 197069, 197294 Sorry, prediction pasa_asmbl_36878.p1 fails validation. (ATG) GC 196372-196393 GT GGG (ACC) AG 196579-196710 GT CAG (AGA) AG 196843-196948 GT AAG (GGT) AG 197069-197294 AC CCA -recovered pasa_asmbl_36878.p1, initial, 196372, 196393 -recovered pasa_asmbl_36878.p1, internal, 196579, 196710 -recovered pasa_asmbl_36878.p1, internal, 196843, 196948 Valid prediction for GeneMark_model.101683_t Valid prediction for snap_scaffold_27-snap.946-T1 Valid prediction for snap_scaffold_27-snap.972-T1 Valid prediction for GeneMark_model.101679_t Valid prediction for GeneMark_model.101724_t Valid prediction for Augustus_model.g38973.t1 Valid prediction for snap_scaffold_27-snap.953-T1 Valid prediction for pasa_asmbl_36880.p2 Valid prediction for snap_scaffold_27-snap.967-T1 Valid prediction for Augustus_model.g38988.t1 Valid prediction for snap_scaffold_27-snap.949-T1 Valid prediction for GlimmerHMM_glimmerT_58491-T1 Valid prediction for GeneMark_model.101673_t Valid prediction for GeneMark_model.101712_t Valid prediction for snap_scaffold_27-snap.955-T1 Couldn't classify 151813, 151981 Sorry, prediction CodingQuarry_transcript_41771-T1 fails validation. (ATG) AG 150832-150962 GT AGG (GCA) AG 151085-151197 GT AGG (AGC) AG 151287-151375 GT ACG (GAT) AG 151508-151621 GT AGG (GAG) AG 151813-151981 AT TGA (GTG) AG 152094-152218 AG GAA -recovered CodingQuarry_transcript_41771-T1, initial, 150832, 150962 -recovered CodingQuarry_transcript_41771-T1, terminal, 152094, 152218 -recovered CodingQuarry_transcript_41771-T1, internal, 150832, 150962 -recovered CodingQuarry_transcript_41771-T1, internal, 151085, 151197 -recovered CodingQuarry_transcript_41771-T1, internal, 151287, 151375 -recovered CodingQuarry_transcript_41771-T1, internal, 151508, 151621 Valid prediction for GlimmerHMM_glimmerT_58496-T1 Valid prediction for GeneMark_model.101681_t Valid prediction for GlimmerHMM_glimmerT_58481-T1 Couldn't classify 194724, 195335 Couldn't classify 195772, 195780 Sorry, prediction pasa_asmbl_36879.p2 fails validation. (TCC) TC 194724-195335 GT AGG (AAA) AG 195772-195780 CC GAC Valid prediction for GeneMark_model.101685_t Valid prediction for GeneMark_model.101692_t Valid prediction for snap_scaffold_27-snap.973-T1 Valid prediction for GeneMark_model.101699_t Valid prediction for pasa_asmbl_36882.p1 Valid prediction for GlimmerHMM_glimmerT_58492-T1 Valid prediction for Augustus_model.g38970.t1 Valid prediction for snap_scaffold_27-snap.952-T1 Valid prediction for GlimmerHMM_glimmerT_58500-T1 Valid prediction for GlimmerHMM_glimmerT_58482-T1 Valid prediction for Augustus_model.g38978.t1 Valid prediction for snap_scaffold_27-snap.943-T1 Valid prediction for CodingQuarry_transcript_41773-T1 Valid prediction for GeneMark_model.101690_t Valid prediction for CodingQuarry_transcript_41775-T1 Valid prediction for Augustus_model.g38966.t1 Valid prediction for snap_scaffold_27-snap.951-T1 Valid prediction for Augustus_model.g38967.t1 Valid prediction for GlimmerHMM_glimmerT_58489-T1 Valid prediction for GlimmerHMM_glimmerT_58497-T1 Valid prediction for Augustus_model.g38985.t1 Valid prediction for GlimmerHMM_glimmerT_58493-T1 Valid prediction for Augustus_model.g38976.t1 Valid prediction for Augustus_model.g38983.t1 Valid prediction for GeneMark_model.101682_t Valid prediction for Augustus_model.g38977.t1 Valid prediction for snap_scaffold_27-snap.936-T1 Valid prediction for GlimmerHMM_glimmerT_58509-T1 Valid prediction for GeneMark_model.101719_t Valid prediction for GeneMark_model.101675_t Valid prediction for GlimmerHMM_glimmerT_58512-T1 Valid prediction for snap_scaffold_27-snap.948-T1 Valid prediction for snap_scaffold_27-snap.947-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_58508-T1 Valid prediction for GeneMark_model.101696_t Valid prediction for snap_scaffold_27-snap.963-T1 Couldn't classify 129185, 129229 Sorry, prediction pasa_asmbl_36891.p1 fails validation. (ATG) AC 126948-127027 GT AGG (CAC) AG 127263-127362 GT GGG (GTT) AG 127590-127653 GT GAG (CCA) AG 127735-127829 GT GGG (GAG) AG 127932-128036 GT AGG (GAT) AG 128147-128251 GT TGG (CCA) AG 128369-128452 GT AGG (GGT) AG 128594-128743 GT CTG (GTT) AG 128869-129057 GC AGG (ATG) AG 129185-129229 GA CGG -recovered pasa_asmbl_36891.p1, initial, 126948, 127027 -recovered pasa_asmbl_36891.p1, terminal, 127590, 127653 -recovered pasa_asmbl_36891.p1, internal, 127263, 127362 -recovered pasa_asmbl_36891.p1, internal, 127590, 127653 -recovered pasa_asmbl_36891.p1, internal, 127735, 127829 -recovered pasa_asmbl_36891.p1, internal, 127932, 128036 -recovered pasa_asmbl_36891.p1, internal, 128147, 128251 -recovered pasa_asmbl_36891.p1, internal, 128369, 128452 -recovered pasa_asmbl_36891.p1, internal, 128594, 128743 -recovered pasa_asmbl_36891.p1, internal, 128869, 129057 Valid prediction for HiQ_model.g38974.t1 Couldn't classify 129317, 129370 Sorry, prediction pasa_asmbl_36890.p1 fails validation. (GAA) AG 129317-129370 GT AGG (CTG) AG 129475-129681 GT TGG (AGG) AG 129937-130029 GT AGG (TTC) AG 130125-130238 GT AGG (GAA) AG 130408-130584 GT AGG (GAA) AG 130784-130948 CG GAC -recovered pasa_asmbl_36890.p1, terminal, 130784, 130948 -recovered pasa_asmbl_36890.p1, internal, 129317, 129370 -recovered pasa_asmbl_36890.p1, internal, 129475, 129681 -recovered pasa_asmbl_36890.p1, internal, 129937, 130029 -recovered pasa_asmbl_36890.p1, internal, 130125, 130238 -recovered pasa_asmbl_36890.p1, internal, 130408, 130584 Valid prediction for snap_scaffold_27-snap.935-T1 Couldn't classify 134988, 135040 Sorry, prediction pasa_asmbl_36885.p1 fails validation. (CAC) AG 134988-135040 GT AAG (ACT) AG 135227-135277 GT AGG (CCA) AG 135467-135544 GT AGG (CAG) AG 135922-136057 GT AGG (CTC) AG 136159-136260 GT AGG (GCT) AG 136396-136485 CA AAC -recovered pasa_asmbl_36885.p1, terminal, 136396, 136485 -recovered pasa_asmbl_36885.p1, internal, 134988, 135040 -recovered pasa_asmbl_36885.p1, internal, 135227, 135277 -recovered pasa_asmbl_36885.p1, internal, 135467, 135544 -recovered pasa_asmbl_36885.p1, internal, 135922, 136057 -recovered pasa_asmbl_36885.p1, internal, 136159, 136260 Valid prediction for GeneMark_model.101688_t Valid prediction for snap_scaffold_27-snap.962-T1 Valid prediction for GlimmerHMM_glimmerT_58499-T1 Valid prediction for CodingQuarry_transcript_41774-T1 Valid prediction for GlimmerHMM_glimmerT_58487-T1 Valid prediction for HiQ_model.g38975.t1 Valid prediction for snap_scaffold_27-snap.941-T1 Valid prediction for snap_scaffold_27-snap.969-T1 Valid prediction for GeneMark_model.101686_t Valid prediction for Augustus_model.g38986.t1 Valid prediction for GeneMark_model.101694_t Couldn't classify 105787, 105849 Couldn't classify 107779, 107818 Sorry, prediction pasa_asmbl_37138.p1 fails validation. (ACT) GC 105787-105849 GT ACG (AGT) AG 105993-106070 GT AGG (GGA) AG 106263-106337 GT AGG (GTG) AG 106611-106728 GT GGG (AAC) AG 106831-106944 GT GCG (ACG) AG 107201-107334 GT AGG (AGT) AG 107557-107639 GT TGG (CTG) AG 107779-107818 AC AGA -recovered pasa_asmbl_37138.p1, internal, 105993, 106070 -recovered pasa_asmbl_37138.p1, internal, 106263, 106337 -recovered pasa_asmbl_37138.p1, internal, 106611, 106728 -recovered pasa_asmbl_37138.p1, internal, 106831, 106944 -recovered pasa_asmbl_37138.p1, internal, 107201, 107334 -recovered pasa_asmbl_37138.p1, internal, 107557, 107639 Valid prediction for GlimmerHMM_glimmerT_58495-T1 Valid prediction for GeneMark_model.101726_t Valid prediction for snap_scaffold_27-snap.950-T1 Valid prediction for CodingQuarry_transcript_41772-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 26103, rend_intergenic: 17819 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26174, rend_intergenic: 26107 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 30167, rend_intergenic: 26217 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93346, rend_intergenic: 91953 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 153915, rend_intergenic: 145694 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157237, rend_intergenic: 154501 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178953, rend_intergenic: 177725 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 205076 -exon list size: 867 building trellis 0.1 0.2 0.3 0.5 0.6 0.7 0.8 0.9 1.0 1.2 1.3 1.4 1.5 1.6 1.7 1.8 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.8 2.9 3.0 3.1 3.2 3.3 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.1 5.2 5.3 5.4 5.5 5.6 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.4 7.5 7.6 7.7 7.8 7.9 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.9 9.0 9.1 9.2 9.3 9.4 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.2 11.3 11.4 11.5 11.6 11.7 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.5 13.6 13.7 13.8 13.9 14.0 14.2 14.3 14.4 14.5 14.6 14.7 14.8 15.0 15.1 15.2 15.3 15.4 15.5 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.3 17.4 17.5 17.6 17.7 17.8 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.6 19.7 19.8 19.9 20.0 20.1 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.9 22.0 22.1 22.2 22.3 22.4 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.4 23.5 23.6 23.7 23.8 23.9 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.7 25.8 25.9 26.0 26.1 26.2 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.2 27.3 27.4 27.5 27.6 27.7 27.8 28.0 28.1 28.2 28.3 28.4 28.5 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.3 30.4 30.5 30.6 30.7 30.8 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.8 31.9 32.0 32.1 32.2 32.3 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.1 34.2 34.3 34.4 34.5 34.6 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.4 36.5 36.6 36.7 36.8 36.9 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.9 38.0 38.1 38.2 38.3 38.4 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.2 40.3 40.4 40.5 40.6 40.7 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.5 42.6 42.7 42.8 42.9 43.0 43.2 43.3 43.4 43.5 43.6 43.7 43.8 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.8 44.9 45.0 45.1 45.2 45.3 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.3 46.4 46.5 46.6 46.7 46.8 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.6 48.7 48.8 48.9 49.0 49.1 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.9 51.0 51.1 51.2 51.3 51.4 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.2 53.3 53.4 53.5 53.6 53.7 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.7 54.8 54.9 55.0 55.1 55.2 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.2 56.3 56.4 56.5 56.6 56.7 56.8 57.0 57.1 57.2 57.3 57.4 57.5 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.3 59.4 59.5 59.6 59.7 59.8 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.6 61.7 61.8 61.9 62.0 62.1 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.1 63.2 63.3 63.4 63.5 63.6 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.4 65.5 65.6 65.7 65.8 65.9 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.7 67.8 67.9 68.0 68.1 68.2 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.2 69.3 69.4 69.5 69.6 69.7 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.5 71.6 71.7 71.8 71.9 72.0 72.2 72.3 72.4 72.5 72.6 72.7 72.8 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.8 73.9 74.0 74.1 74.2 74.3 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.1 76.2 76.3 76.4 76.5 76.6 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.6 77.7 77.8 77.9 78.0 78.1 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.9 80.0 80.1 80.2 80.3 80.4 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.2 82.3 82.4 82.5 82.6 82.7 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.5 84.6 84.7 84.8 84.9 85.0 85.2 85.3 85.4 85.5 85.6 85.7 85.8 86.0 86.1 86.2 86.3 86.4 86.5 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.3 88.4 88.5 88.6 88.7 88.8 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.6 90.7 90.8 90.9 91.0 91.1 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.1 92.2 92.3 92.4 92.5 92.6 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.4 94.5 94.6 94.7 94.8 94.9 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.7 96.8 96.9 97.0 97.1 97.2 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.2 98.3 98.4 98.5 98.6 98.7 98.8 99.0 99.1 99.2 99.3 99.4 99.5 99.7 99.8 99.9 -found 32 predictions from path traversal Error with prediction: snap lend_intergenic: 26103, rend_intergenic: 17819 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26174, rend_intergenic: 26107 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 30167, rend_intergenic: 26217 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93346, rend_intergenic: 91953 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 153915, rend_intergenic: 145694 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157237, rend_intergenic: 154501 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178953, rend_intergenic: 177725 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 26 predictions persist after filtering for low support