-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_27/scaffold_27_1748034-1934529

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_27-snap.434-T1
Valid prediction for GeneMark_model.101152_t
Valid prediction for snap_scaffold_27-snap.403-T1
Couldn't classify 26241, 26322
Couldn't classify 26423, 26506
Sorry, prediction CodingQuarry_transcript_41692-T1 fails validation.
(ATG)	 AA	21589-21604	GT	AAG
(CTG)	 AG	21916-21982	GT	CAG
(GTC)	 AG	22111-22203	GT	GAG
(AAT)	 AG	22452-22511	GT	AGG
(CTA)	 AG	22690-22972	GT	AGG
(GTG)	 AG	24074-24144	GT	AAG
(GAG)	 AG	24325-24371	GT	GGG
(GAA)	 AG	24662-24825	GT	AGG
(GCC)	 AG	24952-25060	GT	GGG
(GTA)	 AG	25246-25285	GT	AGG
(CAT)	 AG	25752-25941	GT	AGG
(GCC)	 AG	26120-26138	GT	AGG
(CCC)	 AG	26241-26322	AT	ACA
(TGC)	 AC	26423-26506	GT	ACG
(TAT)	 AG	27882-27939	GT	AGG
(GGT)	 AG	28043-28131	GT	AAG
(AGC)	 AG	28586-28694	GT	CGG
(ATC)	 AG	28802-28836	GT	GGG
(GGT)	 AG	29042-29069	GA	GAG
-recovered CodingQuarry_transcript_41692-T1, initial, 21589, 21604
add_exon() Sorry, CodingQuarry_transcript_41692-T1 22111-22203-terminal-1 is invalid.
-recovered CodingQuarry_transcript_41692-T1, terminal, 22111, 22203
-recovered CodingQuarry_transcript_41692-T1, terminal, 29042, 29069
-recovered CodingQuarry_transcript_41692-T1, internal, 21916, 21982
-recovered CodingQuarry_transcript_41692-T1, internal, 22111, 22203
-recovered CodingQuarry_transcript_41692-T1, internal, 22452, 22511
-recovered CodingQuarry_transcript_41692-T1, internal, 22690, 22972
-recovered CodingQuarry_transcript_41692-T1, internal, 24074, 24144
-recovered CodingQuarry_transcript_41692-T1, internal, 24325, 24371
-recovered CodingQuarry_transcript_41692-T1, internal, 24662, 24825
-recovered CodingQuarry_transcript_41692-T1, internal, 24952, 25060
-recovered CodingQuarry_transcript_41692-T1, internal, 25246, 25285
-recovered CodingQuarry_transcript_41692-T1, internal, 25752, 25941
-recovered CodingQuarry_transcript_41692-T1, internal, 26120, 26138
-recovered CodingQuarry_transcript_41692-T1, internal, 27882, 27939
-recovered CodingQuarry_transcript_41692-T1, internal, 28043, 28131
-recovered CodingQuarry_transcript_41692-T1, internal, 28586, 28694
-recovered CodingQuarry_transcript_41692-T1, internal, 28802, 28836
Valid prediction for GeneMark_model.101136_t
Valid prediction for snap_scaffold_27-snap.422-T1
Valid prediction for GlimmerHMM_glimmerT_58108-T1
Valid prediction for GeneMark_model.101158_t
Valid prediction for GeneMark_model.101115_t
Valid prediction for GeneMark_model.101120_t
Valid prediction for snap_scaffold_27-snap.412-T1
Valid prediction for GlimmerHMM_glimmerT_58096-T1
Valid prediction for GlimmerHMM_glimmerT_58098-T1
Valid prediction for GeneMark_model.101126_t
Valid prediction for snap_scaffold_27-snap.425-T1
Valid prediction for Augustus_model.g38689.t1
Valid prediction for GlimmerHMM_glimmerT_58089-T1
Valid prediction for snap_scaffold_27-snap.408-T1
Valid prediction for snap_scaffold_27-snap.431-T1
Valid prediction for GeneMark_model.101156_t
Valid prediction for GeneMark_model.101105_t
Valid prediction for GeneMark_model.101113_t
Valid prediction for GeneMark_model.101164_t
Valid prediction for Augustus_model.g38695.t1
Valid prediction for snap_scaffold_27-snap.410-T1
Valid prediction for GeneMark_model.101132_t
Valid prediction for snap_scaffold_27-snap.417-T1
Valid prediction for GlimmerHMM_glimmerT_58094-T1
Valid prediction for snap_scaffold_27-snap.406-T1
Valid prediction for GlimmerHMM_glimmerT_58104-T1
Valid prediction for GlimmerHMM_glimmerT_58095-T1
Valid prediction for GlimmerHMM_glimmerT_58102-T1
Valid prediction for GeneMark_model.101143_t
Couldn't classify 12748, 12767
Couldn't classify 16517, 16585
Sorry, prediction pasa_asmbl_35994.p1 fails validation.
(ATC)	 AA	12748-12767	GT	AAG
(GAT)	 AG	12971-13125	GT	AGG
(ATC)	 AG	13638-13786	GC	AGG
(GCA)	 AG	13917-13982	GT	AGG
(GTG)	 AG	14289-14402	GT	AGG
(AAA)	 AG	15227-15418	GT	AGG
(AAC)	 AG	15815-15949	GT	AGG
(ACG)	 AG	16042-16117	GT	GGG
(CTC)	 AG	16300-16328	GT	AGG
(AGT)	 AG	16517-16585	GA	AGG
-recovered pasa_asmbl_35994.p1, internal, 12971, 13125
-recovered pasa_asmbl_35994.p1, internal, 13638, 13786
-recovered pasa_asmbl_35994.p1, internal, 13917, 13982
-recovered pasa_asmbl_35994.p1, internal, 14289, 14402
-recovered pasa_asmbl_35994.p1, internal, 15227, 15418
-recovered pasa_asmbl_35994.p1, internal, 15815, 15949
-recovered pasa_asmbl_35994.p1, internal, 16042, 16117
-recovered pasa_asmbl_35994.p1, internal, 16300, 16328
Valid prediction for GeneMark_model.101117_t
Valid prediction for Augustus_model.g38696.t1
Valid prediction for snap_scaffold_27-snap.415-T1
Valid prediction for GeneMark_model.101123_t
Valid prediction for GeneMark_model.101141_t
Couldn't classify 69715, 69760
Sorry, prediction pasa_asmbl_36000.p1 fails validation.
(AAC)	 GG	69715-69760	GT	AGG
(GAA)	 AG	71357-71541	GT	AGG
(ACC)	 AG	71847-71998	GT	CCG
(GTC)	 AG	72165-72339	GT	AGG
(GAC)	 AG	72587-72727	CT	AAC
-recovered pasa_asmbl_36000.p1, terminal, 72587, 72727
-recovered pasa_asmbl_36000.p1, internal, 71357, 71541
-recovered pasa_asmbl_36000.p1, internal, 71847, 71998
-recovered pasa_asmbl_36000.p1, internal, 72165, 72339
Valid prediction for HiQ_model.g38691.t1
Valid prediction for snap_scaffold_27-snap.400-T1
Valid prediction for GeneMark_model.101154_t
Valid prediction for GeneMark_model.101134_t
Valid prediction for GlimmerHMM_glimmerT_58097-T1
Valid prediction for GeneMark_model.101121_t
Valid prediction for snap_scaffold_27-snap.419-T1
Valid prediction for snap_scaffold_27-snap.414-T1
Valid prediction for GlimmerHMM_glimmerT_58091-T1
Valid prediction for snap_scaffold_27-snap.437-T1
Valid prediction for GlimmerHMM_glimmerT_58107-T1
Valid prediction for Augustus_model.g38698.t1
Valid prediction for snap_scaffold_27-snap.421-T1
Valid prediction for GeneMark_model.101109_t
Valid prediction for GeneMark_model.101124_t
Valid prediction for Augustus_model.g38694.t1
Valid prediction for GeneMark_model.101111_t
Couldn't classify 26751, 26832
Couldn't classify 26933, 27016
Sorry, prediction pasa_asmbl_35997.p1 fails validation.
(ATG)	 AA	21589-21604	GT	AAG
(CTG)	 AG	21916-21982	GT	CAG
(GTC)	 AG	22111-22203	GT	GAG
(AAT)	 AG	22452-22511	GT	AGG
(CTA)	 AG	22690-22972	GT	AGG
(GTG)	 AG	24074-24144	GT	AAG
(GAG)	 AG	24325-24371	GT	GGG
(GAA)	 AG	24662-24825	GT	AGG
(GCC)	 AG	24952-25060	GT	GGG
(GTA)	 AG	25246-25285	GT	AGG
(CAT)	 AG	25752-25941	GT	AGG
(GCC)	 AG	26120-26138	GT	AGG
(CCC)	 AG	26751-26832	AT	ACA
(TGC)	 AC	26933-27016	GT	ACG
(TAT)	 AG	27882-27939	GT	AGG
(GGT)	 AG	28043-28131	GT	AAG
(AGC)	 AG	28586-28694	GT	CGG
(ATC)	 AG	28802-28836	GT	GGG
(GGT)	 AG	29042-29069	GA	GAG
-recovered pasa_asmbl_35997.p1, initial, 21589, 21604
add_exon() Sorry, pasa_asmbl_35997.p1 22111-22203-terminal-1 is invalid.
-recovered pasa_asmbl_35997.p1, terminal, 22111, 22203
-recovered pasa_asmbl_35997.p1, terminal, 29042, 29069
-recovered pasa_asmbl_35997.p1, internal, 21916, 21982
-recovered pasa_asmbl_35997.p1, internal, 22111, 22203
-recovered pasa_asmbl_35997.p1, internal, 22452, 22511
-recovered pasa_asmbl_35997.p1, internal, 22690, 22972
-recovered pasa_asmbl_35997.p1, internal, 24074, 24144
-recovered pasa_asmbl_35997.p1, internal, 24325, 24371
-recovered pasa_asmbl_35997.p1, internal, 24662, 24825
-recovered pasa_asmbl_35997.p1, internal, 24952, 25060
-recovered pasa_asmbl_35997.p1, internal, 25246, 25285
-recovered pasa_asmbl_35997.p1, internal, 25752, 25941
-recovered pasa_asmbl_35997.p1, internal, 26120, 26138
-recovered pasa_asmbl_35997.p1, internal, 27882, 27939
-recovered pasa_asmbl_35997.p1, internal, 28043, 28131
-recovered pasa_asmbl_35997.p1, internal, 28586, 28694
-recovered pasa_asmbl_35997.p1, internal, 28802, 28836
Valid prediction for GeneMark_model.101149_t
Valid prediction for GeneMark_model.101161_t
Valid prediction for GeneMark_model.101160_t
Valid prediction for snap_scaffold_27-snap.430-T1
Valid prediction for GeneMark_model.101144_t
Couldn't classify 16595, 16616
Sorry, prediction pasa_asmbl_36546.p1 fails validation.
(GAC)	 AT	16595-16616	GT	AGG
(CTG)	 AG	16808-17059	GT	AGG
(ATG)	 AG	17363-17968	GT	GAG
(AGA)	 AG	18140-18204	GT	AGG
(AAG)	 AG	18377-18406	GA	GAG
add_exon() Sorry, pasa_asmbl_36546.p1 17363-17968-initial-1 is invalid.
-recovered pasa_asmbl_36546.p1, initial, 17363, 17968
-recovered pasa_asmbl_36546.p1, terminal, 18377, 18406
-recovered pasa_asmbl_36546.p1, internal, 16808, 17059
-recovered pasa_asmbl_36546.p1, internal, 17363, 17968
-recovered pasa_asmbl_36546.p1, internal, 18140, 18204
Couldn't classify 26751, 26832
Couldn't classify 26933, 27016
Sorry, prediction CodingQuarry_transcript_41693-T1 fails validation.
(ATG)	 AA	21589-21604	GT	AAG
(CTG)	 AG	21916-21982	GT	CAG
(GTC)	 AG	22111-22203	GT	GAG
(AAT)	 AG	22452-22511	GT	AGG
(CTA)	 AG	22690-22972	GT	AGG
(GTG)	 AG	24074-24144	GT	AAG
(GAG)	 AG	24325-24371	GT	GGG
(GAA)	 AG	24662-24825	GT	AGG
(GCC)	 AG	24952-25060	GT	GGG
(GTA)	 AG	25246-25285	GT	AGG
(CAT)	 AG	25752-25941	GT	AGG
(GCC)	 AG	26120-26138	GT	AGG
(CCC)	 AG	26751-26832	AT	ACA
(TGC)	 AC	26933-27016	GT	ACG
(TAT)	 AG	27882-27939	GT	AGG
(GGT)	 AG	28043-28131	GT	AAG
(AGC)	 AG	28586-28694	GT	CGG
(ATC)	 AG	28802-28836	GT	GGG
(GGT)	 AG	29042-29069	GA	GAG
-recovered CodingQuarry_transcript_41693-T1, initial, 21589, 21604
add_exon() Sorry, CodingQuarry_transcript_41693-T1 22111-22203-terminal-1 is invalid.
-recovered CodingQuarry_transcript_41693-T1, terminal, 22111, 22203
-recovered CodingQuarry_transcript_41693-T1, terminal, 29042, 29069
-recovered CodingQuarry_transcript_41693-T1, internal, 21916, 21982
-recovered CodingQuarry_transcript_41693-T1, internal, 22111, 22203
-recovered CodingQuarry_transcript_41693-T1, internal, 22452, 22511
-recovered CodingQuarry_transcript_41693-T1, internal, 22690, 22972
-recovered CodingQuarry_transcript_41693-T1, internal, 24074, 24144
-recovered CodingQuarry_transcript_41693-T1, internal, 24325, 24371
-recovered CodingQuarry_transcript_41693-T1, internal, 24662, 24825
-recovered CodingQuarry_transcript_41693-T1, internal, 24952, 25060
-recovered CodingQuarry_transcript_41693-T1, internal, 25246, 25285
-recovered CodingQuarry_transcript_41693-T1, internal, 25752, 25941
-recovered CodingQuarry_transcript_41693-T1, internal, 26120, 26138
-recovered CodingQuarry_transcript_41693-T1, internal, 27882, 27939
-recovered CodingQuarry_transcript_41693-T1, internal, 28043, 28131
-recovered CodingQuarry_transcript_41693-T1, internal, 28586, 28694
-recovered CodingQuarry_transcript_41693-T1, internal, 28802, 28836
Valid prediction for snap_scaffold_27-snap.428-T1
Valid prediction for GlimmerHMM_glimmerT_58106-T1
Valid prediction for GeneMark_model.101118_t
Valid prediction for GeneMark_model.101128_t
Valid prediction for GeneMark_model.101139_t
Valid prediction for snap_scaffold_27-snap.402-T1
Valid prediction for GeneMark_model.101107_t
Valid prediction for GeneMark_model.101147_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_27-snap.399-T1
Valid prediction for snap_scaffold_27-snap.424-T1
Valid prediction for snap_scaffold_27-snap.426-T1
Valid prediction for GeneMark_model.101131_t
Valid prediction for GeneMark_model.101142_t
Valid prediction for snap_scaffold_27-snap.427-T1
Valid prediction for GeneMark_model.101165_t
Valid prediction for GeneMark_model.101114_t
Valid prediction for snap_scaffold_27-snap.432-T1
Valid prediction for Augustus_model.g38693.t1
Valid prediction for GeneMark_model.101106_t
Valid prediction for snap_scaffold_27-snap.416-T1
Valid prediction for GeneMark_model.101163_t
Valid prediction for Augustus_model.g38692.t1
Valid prediction for Augustus_model.g38699.t1
Valid prediction for GeneMark_model.101122_t
Valid prediction for GeneMark_model.101145_t
Valid prediction for snap_scaffold_27-snap.401-T1
Valid prediction for GlimmerHMM_glimmerT_58105-T1
Valid prediction for Augustus_model.g38700.t1
Valid prediction for GeneMark_model.101119_t
Valid prediction for snap_scaffold_27-snap.411-T1
Valid prediction for HiQ_model.g38690.t1
Valid prediction for GeneMark_model.101129_t
Valid prediction for GeneMark_model.101153_t
Valid prediction for GeneMark_model.101162_t
Valid prediction for snap_scaffold_27-snap.405-T1
Couldn't classify 69116, 69217
Couldn't classify 71025, 71089
Sorry, prediction pasa_asmbl_36744.p1 fails validation.
(GAG)	 TT	69116-69217	GT	AGG
(GGT)	 AG	69817-69964	GT	AGG
(CCA)	 AG	70205-70351	GT	TGG
(AAG)	 AG	71025-71089	GG	AGG
-recovered pasa_asmbl_36744.p1, internal, 69817, 69964
-recovered pasa_asmbl_36744.p1, internal, 70205, 70351
Valid prediction for GeneMark_model.101150_t
Valid prediction for GeneMark_model.101138_t
Valid prediction for snap_scaffold_27-snap.438-T1
Valid prediction for GeneMark_model.101112_t
Valid prediction for snap_scaffold_27-snap.436-T1
Valid prediction for GeneMark_model.101140_t
Valid prediction for Augustus_model.g38697.t1
Valid prediction for snap_scaffold_27-snap.435-T1
Valid prediction for Augustus_model.g38702.t1
Valid prediction for GeneMark_model.101159_t
Valid prediction for GlimmerHMM_glimmerT_58093-T1
Couldn't classify 180549, 181505
Sorry, prediction pasa_asmbl_36736.p1 fails validation.
(GAG)	 CG	180549-181505	AG	GAA
Valid prediction for GlimmerHMM_glimmerT_58092-T1
Couldn't classify 178134, 178258
Couldn't classify 179918, 180125
Sorry, prediction pasa_asmbl_37159.p1 fails validation.
(GGT)	 TC	178134-178258	GT	AGG
(GTA)	 AG	179230-179379	GT	AGG
(GCG)	 AG	179918-180125	AA	ACA
-recovered pasa_asmbl_37159.p1, internal, 179230, 179379
Valid prediction for snap_scaffold_27-snap.429-T1
Valid prediction for GeneMark_model.101108_t
Valid prediction for snap_scaffold_27-snap.433-T1
Valid prediction for GeneMark_model.101127_t
Valid prediction for pasa_asmbl_36737.p1
Valid prediction for snap_scaffold_27-snap.423-T1
Couldn't classify 74789, 75130
Sorry, prediction pasa_asmbl_36743.p2 fails validation.
(TTG)	 GT	74789-75130	TT	GAT
Valid prediction for GeneMark_model.101146_t
Valid prediction for Augustus_model.g38688.t1
Valid prediction for GeneMark_model.101155_t
Valid prediction for GeneMark_model.101151_t
Valid prediction for snap_scaffold_27-snap.418-T1
Valid prediction for GlimmerHMM_glimmerT_58103-T1
Valid prediction for CodingQuarry_transcript_41694-T1
Valid prediction for snap_scaffold_27-snap.420-T1
Valid prediction for GlimmerHMM_glimmerT_58109-T1
Valid prediction for snap_scaffold_27-snap.404-T1
Valid prediction for GeneMark_model.101125_t
Couldn't classify 129117, 129135
Couldn't classify 132896, 132940
Sorry, prediction pasa_asmbl_36741.p1 fails validation.
(AAA)	 TG	129117-129135	GT	AGG
(CCC)	 AG	131241-131448	GT	AAG
(GGC)	 AG	131592-131730	GT	AGG
(TTG)	 AG	132417-132486	GT	GGG
(CTG)	 AG	132771-132817	GT	AGG
(ACC)	 AG	132896-132940	GA	AGG
-recovered pasa_asmbl_36741.p1, internal, 131241, 131448
-recovered pasa_asmbl_36741.p1, internal, 131592, 131730
-recovered pasa_asmbl_36741.p1, internal, 132417, 132486
-recovered pasa_asmbl_36741.p1, internal, 132771, 132817
Valid prediction for GeneMark_model.101130_t
Valid prediction for GlimmerHMM_glimmerT_58099-T1
Valid prediction for GeneMark_model.101137_t
Valid prediction for GeneMark_model.101148_t
Valid prediction for snap_scaffold_27-snap.409-T1
Valid prediction for snap_scaffold_27-snap.407-T1
Valid prediction for GlimmerHMM_glimmerT_58100-T1
Valid prediction for GlimmerHMM_glimmerT_58088-T1
Valid prediction for GlimmerHMM_glimmerT_58090-T1
Valid prediction for Augustus_model.g38701.t1
Valid prediction for GlimmerHMM_glimmerT_58101-T1
Valid prediction for GeneMark_model.101110_t
Valid prediction for GeneMark_model.101133_t
Valid prediction for GeneMark_model.101116_t
Valid prediction for CodingQuarry_transcript_41691-T1
Valid prediction for GeneMark_model.101157_t
Valid prediction for snap_scaffold_27-snap.413-T1
Valid prediction for GeneMark_model.101135_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8552, rend_intergenic: 2119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11661, rend_intergenic: 9238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18406, rend_intergenic: 16186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29069, rend_intergenic: 23658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32606, rend_intergenic: 30423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33856, rend_intergenic: 32988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37553, rend_intergenic: 34233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41295, rend_intergenic: 37679  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49781, rend_intergenic: 42819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69256, rend_intergenic: 62895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88455, rend_intergenic: 75175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93262, rend_intergenic: 88549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112011, rend_intergenic: 102329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116457, rend_intergenic: 115363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123050, rend_intergenic: 116492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142250, rend_intergenic: 123199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147718, rend_intergenic: 142288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172970, rend_intergenic: 148834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178792, rend_intergenic: 173899  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 186496
-exon list size: 882


building trellis

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7.1    
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7.4    
7.5    
7.6    
7.7    
7.8    
7.9    
8.0    
8.1    
8.3    
8.4    
8.5    
8.6    
8.7    
8.8    
8.9    
9.0    
9.2    
9.3    
9.4    
9.5    
9.6    
9.7    
9.8    
10.0    
10.1    
10.2    
10.3    
10.4    
10.5    
10.6    
10.7    
10.9    
11.0    
11.1    
11.2    
11.3    
11.4    
11.5    
11.7    
11.8    
11.9    
12.0    
12.1    
12.2    
12.3    
12.4    
12.6    
12.7    
12.8    
12.9    
13.0    
13.1    
13.2    
13.3    
13.5    
13.6    
13.7    
13.8    
13.9    
14.0    
14.1    
14.3    
14.4    
14.5    
14.6    
14.7    
14.8    
14.9    
15.0    
15.2    
15.3    
15.4    
15.5    
15.6    
15.7    
15.8    
16.0    
16.1    
16.2    
16.3    
16.4    
16.5    
16.6    
16.7    
16.9    
17.0    
17.1    
17.2    
17.3    
17.4    
17.5    
17.6    
17.8    
17.9    
18.0    
18.1    
18.2    
18.3    
18.4    
18.6    
18.7    
18.8    
18.9    
19.0    
19.1    
19.2    
19.3    
19.5    
19.6    
19.7    
19.8    
19.9    
20.0    
20.1    
20.2    
20.4    
20.5    
20.6    
20.7    
20.8    
20.9    
21.0    
21.2    
21.3    
21.4    
21.5    
21.6    
21.7    
21.8    
21.9    
22.1    
22.2    
22.3    
22.4    
22.5    
22.6    
22.7    
22.9    
23.0    
23.1    
23.2    
23.3    
23.4    
23.5    
23.6    
23.8    
23.9    
24.0    
24.1    
24.2    
24.3    
24.4    
24.5    
24.7    
24.8    
24.9    
25.0    
25.1    
25.2    
25.3    
25.5    
25.6    
25.7    
25.8    
25.9    
26.0    
26.1    
26.2    
26.4    
26.5    
26.6    
26.7    
26.8    
26.9    
27.0    
27.1    
27.3    
27.4    
27.5    
27.6    
27.7    
27.8    
27.9    
28.1    
28.2    
28.3    
28.4    
28.5    
28.6    
28.7    
28.8    
29.0    
29.1    
29.2    
29.3    
29.4    
29.5    
29.6    
29.8    
29.9    
30.0    
30.1    
30.2    
30.3    
30.4    
30.5    
30.7    
30.8    
30.9    
31.0    
31.1    
31.2    
31.3    
31.4    
31.6    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.7    
49.8    
49.9    
50.0    
50.1    
50.2    
50.3    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.7    
99.8    
99.9    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 8552, rend_intergenic: 2119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11661, rend_intergenic: 9238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18406, rend_intergenic: 16186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29069, rend_intergenic: 23658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32606, rend_intergenic: 30423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33856, rend_intergenic: 32988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37553, rend_intergenic: 34233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41295, rend_intergenic: 37679  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49781, rend_intergenic: 42819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69256, rend_intergenic: 62895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88455, rend_intergenic: 75175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93262, rend_intergenic: 88549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112011, rend_intergenic: 102329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116457, rend_intergenic: 115363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123050, rend_intergenic: 116492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142250, rend_intergenic: 123199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147718, rend_intergenic: 142288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172970, rend_intergenic: 148834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178792, rend_intergenic: 173899  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support