-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2697

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 167, 386
Couldn't classify 987, 1094
Sorry, prediction snap_scaffold_2697-snap.1-T1 fails validation.
(CAG)	 AG	167-386	GT	AGG
(GGC)	 AG	987-1094	GT	CAG
-recovered snap_scaffold_2697-snap.1-T1, internal, 167, 386
-recovered snap_scaffold_2697-snap.1-T1, internal, 987, 1094
Couldn't classify 167, 386
Sorry, prediction GlimmerHMM_glimmerT_63187-T1 fails validation.
(CAG)	 AG	167-386	GT	AGG
(GGC)	 AG	987-1124	CT	AAC
-recovered GlimmerHMM_glimmerT_63187-T1, terminal, 987, 1124
-recovered GlimmerHMM_glimmerT_63187-T1, internal, 167, 386
Couldn't classify 133, 282
Couldn't classify 1061, 1102
Sorry, prediction GeneMark_model.110529_t fails validation.
(TCC)	 AG	133-282	GT	CAG
(GTA)	 AG	875-887	GT	GAG
(AGT)	 AG	1029-1040	GT	GAG
(TGG)	 AG	1061-1102	GT	AGG
add_exon() Sorry, GeneMark_model.110529_t 875-887-terminal-3 is invalid.
-recovered GeneMark_model.110529_t, terminal, 875, 887
-recovered GeneMark_model.110529_t, internal, 133, 282
-recovered GeneMark_model.110529_t, internal, 875, 887
-recovered GeneMark_model.110529_t, internal, 1029, 1040
-recovered GeneMark_model.110529_t, internal, 1061, 1102

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1145
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support