-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2694

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 327, 380
Sorry, prediction GeneMark_model.110527_t fails validation.
(AGA)	 AG	327-380	GT	AAG
(TTG)	 AG	404-409	GT	CTG
(TTG)	 AG	433-438	GT	AAG
(AGT)	 AG	466-486	GT	AGG
(AGA)	 AG	528-539	GT	TTG
(AGA)	 AG	563-574	GT	TTG
(AGA)	 AG	598-615	GT	GTG
(AGT)	 AG	641-665	GG	AGG
-recovered GeneMark_model.110527_t, terminal, 327, 380
-recovered GeneMark_model.110527_t, terminal, 433, 438
-recovered GeneMark_model.110527_t, terminal, 641, 665
-recovered GeneMark_model.110527_t, internal, 327, 380
-recovered GeneMark_model.110527_t, internal, 404, 409
-recovered GeneMark_model.110527_t, internal, 433, 438
-recovered GeneMark_model.110527_t, internal, 466, 486
-recovered GeneMark_model.110527_t, internal, 528, 539
-recovered GeneMark_model.110527_t, internal, 563, 574
-recovered GeneMark_model.110527_t, internal, 598, 615

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1146
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support