-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2693

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 537, 545
Couldn't classify 826, 846
Sorry, prediction GeneMark_model.110526_t fails validation.
(GGT)	 AG	537-545	GT	GAG
(GGA)	 AG	571-656	GT	AGG
(AGG)	 AG	675-699	GT	GAG
(AGA)	 AG	721-765	GT	GTG
(GAG)	 AG	789-803	GT	ATG
(AGG)	 AG	826-846	GT	AGG
-recovered GeneMark_model.110526_t, terminal, 571, 656
-recovered GeneMark_model.110526_t, internal, 537, 545
-recovered GeneMark_model.110526_t, internal, 571, 656
-recovered GeneMark_model.110526_t, internal, 675, 699
-recovered GeneMark_model.110526_t, internal, 721, 765
-recovered GeneMark_model.110526_t, internal, 789, 803
-recovered GeneMark_model.110526_t, internal, 826, 846

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1146
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support