-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2691

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 35, 154
Sorry, prediction GeneMark_model.110524_t fails validation.
(GAG)	 AG	35-154	GT	GAG
(CGG)	 AG	251-340	GT	GGG
(AGG)	 AG	366-418	GT	AGG
(CAC)	 AG	482-488	GT	AGG
(AGG)	 AG	558-681	CA	GAC
-recovered GeneMark_model.110524_t, terminal, 558, 681
-recovered GeneMark_model.110524_t, internal, 35, 154
-recovered GeneMark_model.110524_t, internal, 251, 340
-recovered GeneMark_model.110524_t, internal, 366, 418
-recovered GeneMark_model.110524_t, internal, 482, 488

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1147
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support