-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_269

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107137_t
Valid prediction for snap_scaffold_269-snap.2-T1
Valid prediction for GeneMark_model.107139_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3257, 3346
Sorry, prediction GlimmerHMM_glimmerT_61611-T1 fails validation.
(GAC)	 AG	3257-3346	GT	ATG
(GCC)	 AG	4504-4566	CC	GAC
-recovered GlimmerHMM_glimmerT_61611-T1, terminal, 4504, 4566
-recovered GlimmerHMM_glimmerT_61611-T1, internal, 3257, 3346
Valid prediction for GeneMark_model.107138_t
Valid prediction for snap_scaffold_269-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_61610-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8735
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support