-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2682

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 850, 1011
Sorry, prediction GlimmerHMM_glimmerT_63185-T1 fails validation.
(ATG)	 AG	59-437	GT	GGG
(AGG)	 AG	850-1011	GT	TGG
-recovered GlimmerHMM_glimmerT_63185-T1, initial, 59, 437
-recovered GlimmerHMM_glimmerT_63185-T1, internal, 59, 437
-recovered GlimmerHMM_glimmerT_63185-T1, internal, 850, 1011
Couldn't classify 1117, 1129
Sorry, prediction GeneMark_model.110521_t fails validation.
(ATG)	 AG	59-369	GT	CAG
(GGG)	 AG	395-400	GT	AGG
(GGG)	 AG	422-430	GT	AGG
(GAT)	 AG	469-489	GT	AGG
(AAG)	 AG	512-523	GT	AGG
(GGG)	 AG	545-583	GT	GAG
(ACG)	 AG	717-727	GT	GGG
(AGG)	 AG	850-1011	GT	TGG
(GCT)	 AG	1117-1129	GC	CAG
-recovered GeneMark_model.110521_t, initial, 59, 369
-recovered GeneMark_model.110521_t, terminal, 512, 523
-recovered GeneMark_model.110521_t, internal, 59, 369
-recovered GeneMark_model.110521_t, internal, 395, 400
-recovered GeneMark_model.110521_t, internal, 422, 430
-recovered GeneMark_model.110521_t, internal, 469, 489
-recovered GeneMark_model.110521_t, internal, 512, 523
-recovered GeneMark_model.110521_t, internal, 545, 583
-recovered GeneMark_model.110521_t, internal, 717, 727
-recovered GeneMark_model.110521_t, internal, 850, 1011
-recovered GeneMark_model.110521_t, internal, 1117, 1129
Couldn't classify 850, 1011
Sorry, prediction snap_scaffold_2682-snap.1-T1 fails validation.
(ATG)	 AG	59-437	GT	GGG
(AGG)	 AG	850-1011	GT	TGG
-recovered snap_scaffold_2682-snap.1-T1, initial, 59, 437
-recovered snap_scaffold_2682-snap.1-T1, internal, 59, 437
-recovered snap_scaffold_2682-snap.1-T1, internal, 850, 1011
Valid prediction for Augustus_model.g42152.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1150
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support