-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2681

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 291, 405
Couldn't classify 863, 955
Sorry, prediction Augustus_model.g42151.t1 fails validation.
(TTC)	 AG	291-405	GT	GGG
(GTC)	 AG	592-695	GT	AGG
(GTC)	 AG	863-955	GT	AGG
-recovered Augustus_model.g42151.t1, internal, 291, 405
-recovered Augustus_model.g42151.t1, internal, 592, 695
-recovered Augustus_model.g42151.t1, internal, 863, 955
Couldn't classify 291, 405
Couldn't classify 863, 955
Sorry, prediction GeneMark_model.110520_t fails validation.
(TTC)	 AG	291-405	GT	GGG
(GTC)	 AG	592-695	GT	AGG
(GTC)	 AG	863-955	GT	AGG
-recovered GeneMark_model.110520_t, internal, 291, 405
-recovered GeneMark_model.110520_t, internal, 592, 695
-recovered GeneMark_model.110520_t, internal, 863, 955
Couldn't classify 291, 405
Couldn't classify 863, 955
Sorry, prediction snap_scaffold_2681-snap.1-T1 fails validation.
(TTC)	 AG	291-405	GT	GGG
(GTC)	 AG	592-695	GT	AGG
(GTC)	 AG	863-955	GT	AGG
-recovered snap_scaffold_2681-snap.1-T1, internal, 291, 405
-recovered snap_scaffold_2681-snap.1-T1, internal, 592, 695
-recovered snap_scaffold_2681-snap.1-T1, internal, 863, 955
Couldn't classify 863, 955
Sorry, prediction GlimmerHMM_glimmerT_63184-T1 fails validation.
(ATG)	 CC	366-405	GT	GGG
(GTC)	 AG	592-695	GT	AGG
(GTC)	 AG	863-955	GT	AGG
-recovered GlimmerHMM_glimmerT_63184-T1, initial, 366, 405
-recovered GlimmerHMM_glimmerT_63184-T1, internal, 592, 695
-recovered GlimmerHMM_glimmerT_63184-T1, internal, 863, 955

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1153
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support