-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2680

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 429, 501
Couldn't classify 727, 732
Sorry, prediction GeneMark_model.110519_t fails validation.
(AGT)	 AG	429-501	GT	GAG
(GTG)	 AG	564-572	GT	AGG
(GGA)	 AG	609-614	GT	AGG
(GAG)	 AG	642-656	GT	AGG
(GGG)	 AG	682-699	GT	AGG
(GAG)	 AG	727-732	GT	GGG
-recovered GeneMark_model.110519_t, internal, 429, 501
-recovered GeneMark_model.110519_t, internal, 564, 572
-recovered GeneMark_model.110519_t, internal, 609, 614
-recovered GeneMark_model.110519_t, internal, 642, 656
-recovered GeneMark_model.110519_t, internal, 682, 699
-recovered GeneMark_model.110519_t, internal, 727, 732

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 287, 340
Couldn't classify 926, 979
Sorry, prediction snap_scaffold_2680-snap.1-T1 fails validation.
(GGG)	 AG	287-340	GT	CGG
(GGG)	 AG	620-727	GT	CTG
(GGT)	 AG	926-979	GT	ATG
-recovered snap_scaffold_2680-snap.1-T1, internal, 287, 340
-recovered snap_scaffold_2680-snap.1-T1, internal, 620, 727
-recovered snap_scaffold_2680-snap.1-T1, internal, 926, 979
Couldn't classify 287, 340
Couldn't classify 926, 979
Sorry, prediction Augustus_model.g42150.t1 fails validation.
(GGG)	 AG	287-340	GT	CGG
(GGG)	 AG	620-727	GT	CTG
(GGT)	 AG	926-979	GT	ATG
-recovered Augustus_model.g42150.t1, internal, 287, 340
-recovered Augustus_model.g42150.t1, internal, 620, 727
-recovered Augustus_model.g42150.t1, internal, 926, 979

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1153
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support