-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2678

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 48, 147
Couldn't classify 1073, 1107
Sorry, prediction GeneMark_model.110518_t fails validation.
(ACC)	 AG	48-147	GT	GAG
(GGG)	 AG	315-326	GT	CAG
(AGA)	 AG	373-420	GT	GAG
(ACA)	 AG	818-823	GT	CAG
(AGA)	 AG	921-929	GT	CAG
(AGG)	 AG	979-993	GT	GAG
(AGA)	 AG	1016-1024	GT	CTG
(TGG)	 AG	1073-1107	GT	TGG
-recovered GeneMark_model.110518_t, internal, 48, 147
-recovered GeneMark_model.110518_t, internal, 315, 326
-recovered GeneMark_model.110518_t, internal, 373, 420
-recovered GeneMark_model.110518_t, internal, 818, 823
-recovered GeneMark_model.110518_t, internal, 921, 929
-recovered GeneMark_model.110518_t, internal, 979, 993
-recovered GeneMark_model.110518_t, internal, 1016, 1024
-recovered GeneMark_model.110518_t, internal, 1073, 1107

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1153
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support