-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2677

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g42149.t1
add_exon() Sorry, Augustus_model.g42149.t1 322-445-initial-1 is invalid.
add_exon() Sorry, Augustus_model.g42149.t1 723-839-terminal-2 is invalid.
Valid prediction for GlimmerHMM_glimmerT_63183-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63183-T1 322-445-initial-1 is invalid.
add_exon() Sorry, GlimmerHMM_glimmerT_63183-T1 723-839-terminal-2 is invalid.
Valid prediction for CodingQuarry_transcript_40372-T1
Couldn't classify 723, 824
Sorry, prediction snap_scaffold_2677-snap.1-T1 fails validation.
(ATG)	 AG	322-445	GT	GGG
(GTG)	 AG	723-824	GT	AGG
add_exon() Sorry, snap_scaffold_2677-snap.1-T1 322-445-initial-1 is invalid.
-recovered snap_scaffold_2677-snap.1-T1, initial, 322, 445
-recovered snap_scaffold_2677-snap.1-T1, internal, 322, 445
-recovered snap_scaffold_2677-snap.1-T1, internal, 723, 824

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1154
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support