-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2674

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 272, 307
Couldn't classify 1066, 1129
Sorry, prediction GeneMark_model.110515_t fails validation.
(AGA)	 AG	272-307	GT	GTG
(GGT)	 AG	347-367	GT	ATG
(GGA)	 AG	397-408	GT	GAG
(AAA)	 AG	1066-1129	GT	GGG
-recovered GeneMark_model.110515_t, internal, 272, 307
-recovered GeneMark_model.110515_t, internal, 347, 367
-recovered GeneMark_model.110515_t, internal, 397, 408
-recovered GeneMark_model.110515_t, internal, 1066, 1129

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1155
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support