-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2670

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 25, 38
Couldn't classify 1011, 1042
Sorry, prediction GeneMark_model.110512_t fails validation.
(GGT)	 AG	25-38	GT	AAG
(AGG)	 AG	86-199	GC	GAG
(AGA)	 AG	221-302	GT	CGG
(CCC)	 AG	341-390	GT	ATG
(ATA)	 AG	640-660	GT	TGG
(GGT)	 AG	1011-1042	GT	AGG
-recovered GeneMark_model.110512_t, internal, 25, 38
-recovered GeneMark_model.110512_t, internal, 86, 199
-recovered GeneMark_model.110512_t, internal, 221, 302
-recovered GeneMark_model.110512_t, internal, 341, 390
-recovered GeneMark_model.110512_t, internal, 640, 660
-recovered GeneMark_model.110512_t, internal, 1011, 1042
Couldn't classify 81, 302
Sorry, prediction snap_scaffold_2670-snap.1-T1 fails validation.
(AAC)	 AG	81-302	GT	CGG
(CCC)	 AG	341-400	CA	AGC
-recovered snap_scaffold_2670-snap.1-T1, terminal, 341, 400
-recovered snap_scaffold_2670-snap.1-T1, internal, 81, 302

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1156
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support