-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_267

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_267-snap.1-T1
Valid prediction for Augustus_model.g40962.t1
add_exon() Sorry, Augustus_model.g40962.t1 419-563-terminal-1 is invalid.
Valid prediction for GeneMark_model.107130_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 113, 181
Sorry, prediction GeneMark_model.107132_t fails validation.
(AGA)	 AG	113-181	GT	AGG
(AAG)	 AG	934-1042	CT	GAC
-recovered GeneMark_model.107132_t, terminal, 934, 1042
-recovered GeneMark_model.107132_t, internal, 113, 181
Valid prediction for GeneMark_model.107131_t
Valid prediction for GlimmerHMM_glimmerT_61606-T1
Valid prediction for GeneMark_model.107129_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8768
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support