-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2669

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63181-T1
Couldn't classify 616, 765
Sorry, prediction snap_scaffold_2669-snap.1-T1 fails validation.
(GGT)	 AG	616-765	GT	AGG
(ATC)	 AG	856-990	CC	GAC
-recovered snap_scaffold_2669-snap.1-T1, terminal, 856, 990
-recovered snap_scaffold_2669-snap.1-T1, internal, 616, 765
Couldn't classify 616, 765
Sorry, prediction Augustus_model.g42146.t1 fails validation.
(GGT)	 AG	616-765	GT	AGG
(ATC)	 AG	856-990	CC	GAC
-recovered Augustus_model.g42146.t1, terminal, 856, 990
-recovered Augustus_model.g42146.t1, internal, 616, 765
Couldn't classify 39, 81
Couldn't classify 1005, 1099
Sorry, prediction GeneMark_model.110511_t fails validation.
(GAT)	 AG	39-81	GT	CTG
(GGT)	 AG	616-765	GT	AGG
(ATC)	 AG	856-978	GC	ACG
(GCA)	 AG	1005-1099	GT	GAG
-recovered GeneMark_model.110511_t, internal, 39, 81
-recovered GeneMark_model.110511_t, internal, 616, 765
-recovered GeneMark_model.110511_t, internal, 856, 978
-recovered GeneMark_model.110511_t, internal, 1005, 1099

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1157
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support