-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2664

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 38, 70
Couldn't classify 1016, 1097
Sorry, prediction GeneMark_model.110508_t fails validation.
(AAG)	 AG	38-70	GT	AGG
(CGA)	 AG	92-143	GT	CTG
(AGG)	 AG	263-279	GT	CAG
(GGA)	 AG	383-392	GT	GGG
(GAG)	 AG	1016-1097	GT	ATG
-recovered GeneMark_model.110508_t, internal, 38, 70
-recovered GeneMark_model.110508_t, internal, 92, 143
-recovered GeneMark_model.110508_t, internal, 263, 279
-recovered GeneMark_model.110508_t, internal, 383, 392
-recovered GeneMark_model.110508_t, internal, 1016, 1097

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1158
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support