-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2662

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 91, 249
Sorry, prediction snap_scaffold_2662-snap.1-T1 fails validation.
(GCC)	 AG	91-249	GT	CGG
(CAT)	 AG	459-586	GT	AGG
(GGG)	 AG	729-939	CT	GAC
-recovered snap_scaffold_2662-snap.1-T1, terminal, 729, 939
-recovered snap_scaffold_2662-snap.1-T1, internal, 91, 249
-recovered snap_scaffold_2662-snap.1-T1, internal, 459, 586
Couldn't classify 91, 249
Sorry, prediction Augustus_model.g42144.t1 fails validation.
(GCC)	 AG	91-249	GT	CGG
(CAT)	 AG	459-586	GT	AGG
(GAA)	 AG	823-949	AA	AAA
-recovered Augustus_model.g42144.t1, terminal, 823, 949
-recovered Augustus_model.g42144.t1, internal, 91, 249
-recovered Augustus_model.g42144.t1, internal, 459, 586
Couldn't classify 748, 945
Sorry, prediction GeneMark_model.110506_t fails validation.
(ATG)	 AA	509-549	GT	GAG
(GGG)	 AG	748-945	GT	GTG
-recovered GeneMark_model.110506_t, initial, 509, 549
-recovered GeneMark_model.110506_t, internal, 748, 945

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1158
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support