-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2661

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 65, 79
Couldn't classify 871, 970
Sorry, prediction GeneMark_model.110505_t fails validation.
(AGA)	 AG	65-79	GT	GAG
(GGA)	 AG	114-131	GT	GTG
(CGT)	 AG	260-325	GT	GAG
(CCC)	 AG	504-548	GT	CTG
(AGA)	 AG	777-788	GT	GGG
(GAG)	 AG	839-847	GT	GAG
(AGG)	 AG	871-970	GT	CCG
-recovered GeneMark_model.110505_t, internal, 65, 79
-recovered GeneMark_model.110505_t, internal, 114, 131
-recovered GeneMark_model.110505_t, internal, 260, 325
-recovered GeneMark_model.110505_t, internal, 504, 548
-recovered GeneMark_model.110505_t, internal, 777, 788
-recovered GeneMark_model.110505_t, internal, 839, 847
-recovered GeneMark_model.110505_t, internal, 871, 970

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1158
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support