-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2660

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 469, 480
Couldn't classify 948, 964
Sorry, prediction GeneMark_model.110504_t fails validation.
(AGG)	 AG	469-480	GT	GAG
(AGA)	 AG	504-521	GT	GAG
(AGA)	 AG	568-579	GT	GAG
(GAG)	 AG	610-621	GT	GAG
(AGA)	 AG	646-663	GT	GAG
(AGA)	 AG	694-726	GT	GAG
(AGA)	 AG	753-764	GT	GAG
(AGA)	 AG	801-821	GT	GAG
(AGA)	 AG	854-874	GT	GAG
(AGA)	 AG	907-924	GT	GGG
(TGA)	 AG	948-964	GT	GAG
-recovered GeneMark_model.110504_t, internal, 469, 480
-recovered GeneMark_model.110504_t, internal, 504, 521
-recovered GeneMark_model.110504_t, internal, 568, 579
-recovered GeneMark_model.110504_t, internal, 610, 621
-recovered GeneMark_model.110504_t, internal, 646, 663
-recovered GeneMark_model.110504_t, internal, 694, 726
-recovered GeneMark_model.110504_t, internal, 753, 764
-recovered GeneMark_model.110504_t, internal, 801, 821
-recovered GeneMark_model.110504_t, internal, 854, 874
-recovered GeneMark_model.110504_t, internal, 907, 924
-recovered GeneMark_model.110504_t, internal, 948, 964

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1159
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support