-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2658

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 145, 166
Couldn't classify 1119, 1141
Sorry, prediction GeneMark_model.110503_t fails validation.
(ACT)	 AG	145-166	GT	AGG
(AGG)	 AG	196-228	GT	AGG
(AGA)	 AG	283-315	GT	AGG
(AGC)	 AG	976-1030	GT	TGG
(GAC)	 AG	1119-1141	GC	AGG
-recovered GeneMark_model.110503_t, internal, 145, 166
-recovered GeneMark_model.110503_t, internal, 196, 228
-recovered GeneMark_model.110503_t, internal, 283, 315
-recovered GeneMark_model.110503_t, internal, 976, 1030
-recovered GeneMark_model.110503_t, internal, 1119, 1141

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1159
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support