-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2657

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g42143.t1
add_exon() Sorry, Augustus_model.g42143.t1 582-720-terminal-1 is invalid.
Couldn't classify 545, 696
Sorry, prediction GeneMark_model.110502_t fails validation.
(AGT)	 AG	545-696	GT	AGG
-recovered GeneMark_model.110502_t, internal, 545, 696
Valid prediction for GlimmerHMM_glimmerT_63179-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63179-T1 545-720-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1159
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support